Candida tropicalis: CTRG_04504
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Entry
CTRG_04504 CDS
T01115
Name
(RefSeq) conserved hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ctp
Candida tropicalis
Pathway
ctp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTRG_04504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctp03019
]
CTRG_04504
Messenger RNA biogenesis [BR:
ctp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
CTRG_04504
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
8299873
NCBI-ProteinID:
XP_002550206
UniProt:
C5MEL1
LinkDB
All DBs
Position
Unknown
AA seq
786 aa
AA seq
DB search
MSSSSSDPQDLFKDILPKLTSTIRAANSLAAQDVNFYKAVDHELSEEIDEQGKRLLEISN
DLLRSASSNPSEFNSILYGKDEISSESSWKPISTILDSIFDKIEMTFDQSKRKSPSGDDK
DKQYQYLDEGNTTIKNEKSQRIQKPQLKFKIPVDNSEETPFKPRLTTKPNALVPFKDTMV
NPEPVWEDTVEIIDPPYYAQPYEYEIDNQPYPEKVLTKSEPISPQDWSSTKATWVDTVEA
LNKMIEELKKSEEIAVDLEHHDFRTYYGIVCLMQISNRDQDWIIDTLALRDELTELNEVF
TNPNIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASRALGLSRFSLAYLLEHYAQFKTS
KKYQLADWRIRPLSSPMLAYARSDTHFLLYIYDQLKNKLIDSDKLRGVLHDSRQVAKRRF
EYTKFRPLANLFSKQVTCPVMAFNPKEPWGSIVSQYNVPPFKKPLVEVLYKWRDAMARKE
DESVRFIMPNQLLVSLSLLESPVDSIKVLNTPNFVTDAVRINAKEIAQLIERTNKETEVG
DWDQVDQWMKNQTLQQDENLIDNVAQCSEIFDNLIQQNSTVFENPKDLLNESSVAFKNIY
NNGKSLYTLEFTDKKVIKHNINETFASRLEIVWKRLNEEKFVRTVPIDDINEENEQEEVE
EEPSSESRSTTKKSSSSILFDDDRDINPNELITLRKRHVQNSKTTKNSSKQQQEQQQLQA
KQTELDFANADKILLTGSKNRSDKQQKKKRSFDPYGRDNEGPKPAKKAKTMTTGKSSTYK
TKSRRS
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatcttcatcagatcctcaggatcttttcaaagacattttacctaaattaaca
agtactataagagcagccaattcattagctgcacaagatgttaatttttataaagctgtt
gatcatgaattaagtgaagagattgatgaacagggtaaaagattgcttgagatatctaat
gatttattaagatcagcatcatctaatccaagtgaatttaattctattttatatgggaaa
gatgaaatcagttctgaatcatcatggaaaccaatttcaacaatacttgattccatattt
gataaaattgaaatgacttttgatcaatctaaaagaaaatcaccttctggagatgataaa
gataaacaatatcaatacttagatgaaggtaatactaccattaaaaatgaaaaatctcaa
agaattcaaaaacctcaactaaaatttaaaatcccagttgataattcagaagaaactcca
tttaaaccaaggttgaccactaaaccaaatgctttggtaccctttaaagatactatggtg
aatccagaaccagtctgggaagacactgttgaaatcatagatcctccatattatgctcaa
ccgtatgaatatgaaatcgataatcaaccatatcctgagaaggtattaactaagtcagaa
cctatatctcctcaagattggtcatctactaaagcaacatgggttgacactgttgaagca
ttaaacaaaatgattgaagaattgaagaaactggaagaaattgcagttgatttggaacat
catgatttcagaacatactatggtattgtttgtttaatgcaaatttctaatcgtgatcaa
gattggattatcgatactttagcattacgtgatgaattaactgaattgaacgaagtgttt
accaatccgaatattgttaaagttttccatggggcttttatggatattatttggttacaa
agagatttggggttgtatattgtttctttatttgatacatatcatgcttctagagcactt
gggttatccagattttcattggcttatttgttagaacattatgctcaatttaaaacttct
aagaaatatcaattagctgattggagaataagaccattatcttcaccaatgttggcatat
gctagatcagatactcatttccttttgtacatttatgatcaacttaaaaacaaattgata
gattctgataagttgcgtggagtattacatgattcacgtcaagttgcaaagagaagattt
gagtacactaaattcagaccattagcaaatttattttccaaacaagttacatgtccagta
atggcattcaatccaaaggaaccatggggttctattgtatctcaatataatgttccacca
ttcaaaaaacctttagttgaagtattatataaatggcgagatgcaatggcacgtaaagaa
gatgaatcggtaagatttattatgccaaatcaacttttagttagtttatcacttttagaa
tcaccagttgacagtattaaagtattaaacacaccaaattttgttactgatgccgttaga
attaatgccaaagaaattgctcaattgattgaacgaacaaataaagaaacagaagttgga
gattgggatcaagtagatcaatggatgaagaaccaaactcttcaacaagatgaaaatctt
attgataatgttgcccaatgtctggaaatttttgacaatttaattcaacagaactcaaca
gtttttgaaaatcctaaagatttattaaatgaaagttcggttgcgttcaaaaatatttac
aataatggtaaatcattatacactttggaattcacagataagaaagtaatcaaacataac
attaatgaaacttttgcttcaagattagaaattgtttggaaaagattaaatgaagaaaaa
ttcgttcgtacagttcctatcgatgatatcaatgaagaaaatgaacaagaagaagttgaa
gaagaaccttcttcagaaagtcgatcaacaaccaaaaaactgtcaagttcaatattattc
gatgatgatagagacattaatccaaatgaacttataacccttcgtaagcgacacgttcaa
aattccaaaactaccaaaaactcatcaaaacaacaacaagagcaacagcaactacaagcc
aaacaaactgaacttgattttgccaatgctgataaaatattgcttactggttctaaaaat
agatctgataaacaacaaaagaagaaacgtagttttgatccatacggtagagataatgaa
ggtccaaaacctgctaagaaagctaagactatgactacaggtaaatcatctacatataaa
acaaaaagcagaagatcctaa
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