Candida tropicalis: CTRG_04765
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Entry
CTRG_04765 CDS
T01115
Name
(RefSeq) conserved hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
ctp
Candida tropicalis
Pathway
ctp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTRG_04765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctp03019
]
CTRG_04765
Messenger RNA biogenesis [BR:
ctp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CTRG_04765
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CTRG_04765
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
CSL4_N
ECR1_N
DUF6383
DUF809
Motif
Other DBs
NCBI-GeneID:
8298118
NCBI-ProteinID:
XP_002550467
UniProt:
C5MFC2
LinkDB
All DBs
Position
Unknown
AA seq
354 aa
AA seq
DB search
MMVMMEKIFLVLFIFFFFWELKNSSHSISPIFFLLEIAKIRIMTEEVKTVVPGQYITPLY
KLDENGKSKLQYIPGKGTIISNIEIPNNDQGKSIPIIVSTILGTVHIKEIVSNDKETITT
KDGEDDGKMKIDKEEDGQEEEEGQGEKIIKHIVNVIPKGSTSLISSTIDEEKENQISINL
PKENDIVLVRITKISNIQAYCEILSLENKPILPDSGVGVNGSISHISIPSTGGSQHLFNL
QSIASSQSTLSNFQIYDIGENFKGIIRINDIRSTERDKLKIIDCFKPGDIVRAIIISLGD
GSNYYLSTARNDLGVVFAKSENGAGELMYPLDWQNMIDVETGLIEKRKNANPFI
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgatggtgatgatggagaagatatttttggttttatttatttttttttttttttgggag
ttgaaaaattcatctcatctgatatcaccaatctttttccttttagaaatagccaaaatt
agaataatgacagaagaggtaaagacagtagtaccgggacagtatataactccattatat
aaattagatgaaaatgggaaatctaaattacaatatattcctggtaaaggtacaataatt
tcaaatattgaaattccaaataatgatcaaggaaaatcaattccaattatagtatctaca
attcttggtactgttcatattaaagaaatcgtatccaatgataaagaaacaatcaccacc
aaagatggagaagatgatggtaagatgaaaattgataaggaagaagatgggcaagaagaa
gaagaaggacaaggagaaaagataattaaacatatagttaatgtaattccaaaaggatca
acaagtttaatttcatcaacaattgatgaagaaaaagaaaatcaaatatcaattaattta
cctaaagaaaatgatatagtattagttagaataactaaaataagtaatattcaagcatat
tgtgaaattttatcattagaaaataaaccaattttaccagattcaggtgttggtgtaaat
ggatcaatatctcatatttcaattccttcaactggtggatcacaacatttatttaattta
caatcaatagctagttcacaatcaacattatcaaattttcaaatttatgatattggggaa
aattttaaaggtattattagaattaatgatattagatcaactgaaagagataaattaaaa
attattgattgctttaaacctggtgatattgtaagagctattattatttctttaggtgat
ggttcaaattattatttgagtactgctagaaatgatttaggtgttgtttttgctaaaagt
gaaaatggtgctggtgaattaatgtatcctttagattggcaaaatatgattgatgtagaa
actggattaattgaaaaacgtaaaaatgcaaatccattcatataa
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