Candida tropicalis: CTRG_04810
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Entry
CTRG_04810 CDS
T01115
Name
(RefSeq) eukaryotic initiation factor 4A-12
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ctp
Candida tropicalis
Pathway
ctp03013
Nucleocytoplasmic transport
ctp03015
mRNA surveillance pathway
ctp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTRG_04810
09122 Translation
03013 Nucleocytoplasmic transport
CTRG_04810
03015 mRNA surveillance pathway
CTRG_04810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctp03019
]
CTRG_04810
03041 Spliceosome [BR:
ctp03041
]
CTRG_04810
03009 Ribosome biogenesis [BR:
ctp03009
]
CTRG_04810
03012 Translation factors [BR:
ctp03012
]
CTRG_04810
Enzymes [BR:
ctp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CTRG_04810
Messenger RNA biogenesis [BR:
ctp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CTRG_04810
mRNA cycle factors
Stress granule specific factors
CTRG_04810
Spliceosome [BR:
ctp03041
]
Complex C
Other components
EJC/TREX
CTRG_04810
Ribosome biogenesis [BR:
ctp03009
]
Eukaryotic type
90S particles
Helicases
CTRG_04810
Translation factors [BR:
ctp03012
]
Eukaryotic type
Initiation factors
eIF-4
CTRG_04810
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Helicase_RecD
COG4_N
AAA_22
Flavi_DEAD
AAA
Motif
Other DBs
NCBI-GeneID:
8296521
NCBI-ProteinID:
XP_002550512
UniProt:
C5MFG7
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MDEFDRELDNELEFSHKSTKGIKVHRTFESMKLKPELLKGIYAYGFEAPSAIQSRAIMQI
ISGKDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELATQIQNVVKHLGDY
MNIHTHACIGGKNVGDDVKKLQQGQQIVSGTPGRVLDVIKRRNLQTRNIKVLILDEADEL
FTKGFKEQIYEIYKHLPPAVQVVVVSATLSREVLEMTSKFTTDPVKILVKQDEISLSGIK
QYYVQCEQEDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMK
QDERESIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFG
RKGTAINLITKDDVSTLKELERHYSTKIREMPMNINDIM
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggatgaatttgatagagaacttgataacgagttagaatttagtcataaatccaccaaa
ggaattaaggtacatcgtacttttgaaagtatgaaattaaaaccagaacttttaaaaggt
atttatgcttatggttttgaagccccttctgcaattcaatcgagagctattatgcaaatt
ataagtgggaaagatacaatagcacaagctcaatcgggtactgggaaaacagctactttt
tccattggtatgcttgaagttattgatacaaaatcaaaggagtgtcaagcattgatttta
tccccaactagagaattggcaacccagattcaaaatgtcgtgaaacatctcggagattat
atgaatattcatacacatgcatgtattggaggtaaaaatgtgggtgacgatgtaaagaaa
ttgcaacagggacaacaaattgtcagtggaacaccgggaagagttcttgatgttatcaaa
agaagaaatttgcaaactagaaatatcaaagtcttgattttagatgaagcagatgaattg
tttactaaaggttttaaagaacaaatttatgaaatttacaagcacttaccacctgccgtt
caggttgttgttgtaagtgctactttatcaagagaggttttggaaatgacaagtaaattt
accactgatcctgtgaaaattttggttaagcaagatgaaatatcccttctgggtattaag
cagtactatgtgcaatgtgaacaggaagattggaaatttgacactttgtgtgatttgtat
gataatcttacaattactcaggctgtgattttttgtaatacaaagttgaaagttaattgg
ttgaccgaccaaatgagaaaacaaaattttactgttgtgtcaatgcatggagatatgaag
caagatgaacgagagtctattatgaacgattttagaaccggtaactcaagagtgttgatt
tctactgatgtttgggctagaggtatcgatgttcaacaagtgtctttggttatcaattac
gatttgccaacagacaaggagaattatatccacagaataggaagatccggtagatttgga
agaaaagggactgctatcaatctcataactaaagacgatgtgtctacgctaaaagaactc
gaaaggcactattctaccaagatcagagagatgccaatgaacattaacgatataatgtga
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