KEGG   Candida tropicalis: CTRG_05004
Entry
CTRG_05004        CDS       T01115                                 
Name
(RefSeq) conserved hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ctp  Candida tropicalis
Pathway
ctp03018  RNA degradation
ctp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ctp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CTRG_05004
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CTRG_05004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctp03019]
    CTRG_05004
   03041 Spliceosome [BR:ctp03041]
    CTRG_05004
Messenger RNA biogenesis [BR:ctp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CTRG_05004
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CTRG_05004
Spliceosome [BR:ctp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CTRG_05004
SSDB
Motif
Pfam: LSM Adeno_E4_34
Other DBs
NCBI-GeneID: 8299078
NCBI-ProteinID: XP_002550706
UniProt: C5MG11
LinkDB
Position
Unknown
AA seq 96 aa
MNLTLHNVIQTNSNGDEFTKIPEIYIRGMHIKYLRIPDDIMSYAKEQSMINMENRNRYQK
RRTGGGNGNDHQYQNRRYGNRQYQGNQGQSGGYWRK
NT seq 291 nt   +upstreamnt  +downstreamnt
atgaatctaacattacataatgtgatacaaacaaattcaaatggtgatgaattcactaaa
atacccgaaatttatattcgaggaatgcatattaaatatttacgtattcctgatgatatt
atgtcatatgctaaagaacaaagtatgataaatatggaaaatagaaatagatatcaaaaa
agaagaactggaggtggtaatggaaatgatcatcaatatcaaaatagaagatatggtaat
agacaatatcaaggtaatcaaggtcaaagtggtggttattggcgtaaataa

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