Candida tropicalis: CTRG_05135
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Entry
CTRG_05135 CDS
T01115
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ctp
Candida tropicalis
Pathway
ctp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTRG_05135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctp03019
]
CTRG_05135
03041 Spliceosome [BR:
ctp03041
]
CTRG_05135
03009 Ribosome biogenesis [BR:
ctp03009
]
CTRG_05135
03016 Transfer RNA biogenesis [BR:
ctp03016
]
CTRG_05135
Enzymes [BR:
ctp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CTRG_05135
Messenger RNA biogenesis [BR:
ctp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CTRG_05135
Spliceosome [BR:
ctp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CTRG_05135
Complex C
U4/U6.U5 tri-SnRNP related factors
CTRG_05135
Ribosome biogenesis [BR:
ctp03009
]
Eukaryotic type
Pre-60S particles
Helicases
CTRG_05135
Transfer RNA biogenesis [BR:
ctp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CTRG_05135
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
NA-iREase2
AAA_22
WIV_2
ubiquitin
Motif
Other DBs
NCBI-GeneID:
8299291
NCBI-ProteinID:
XP_002550837
UniProt:
C5MGE2
LinkDB
All DBs
Position
Unknown
AA seq
1056 aa
AA seq
DB search
MDDLFDVFDEAPQTAPPKIEEIKEDIPASTTTSNKKRSRESDEQSKKESKTNDIKKTKKH
EDIKPVVFDSVEIETSREVKASEGLLSKPSTSDADNKLKLRHQVRHQVAIPPSYPYIPIG
EHKRKEDARTYPFVLDPFQDTAISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLRDKQRV
IYTSPIKALSNQKYRELQAIFGDVGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMRE
VAWVIFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPCH
VVYTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATIGDNTGDDPASADKSR
NGKKGKTFKGGNKDGKSDIYKIVKMIYMKKYNPVIVFSFSKRECESLALKMSKLDFNTDE
EREALVKIFNNAIELLPENDRELPQIKNILPLLKRGIGIHHSGLLPILKEIIEILFQEGF
LKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGEYIQMSGRAGRRGLDDRGIV
IMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMIVNLMRVEGISPEFMLENSFFQFQKA
ASVPVMEDKMLTYKKELEDIHINDEGIIKEYYELQQQLDKYNSDVQKVITHPGNSLPFLQ
DGRVIKVKIGNQDYGWGMVTTFVKRNRKSQQEEFTPHEAYVVEVFITSMFIDSPVNLIKK
FNPLLPEGIRPAKSGEQTRAEFISITLDSIEKISTVRLRVPDDYKSSTAKRTLVKTLKDL
PKKLPDGIPLIDPVGSMKITDEDFKKLLNKIDILESKISANPLHNSARLKDLYEQYSYKV
KLETQIKQLKEKIFQAEAVVQLEQLGNMKRVLKKLELTGPNDIVELKGRVAAEISTGDEL
MITELLFSGFFNDLTPQQICGLLSCFIFQERAKELPKLKPELAEPAKFIHETASKIAKIS
KNCNLEIVEKDYVESFNLALVEVVFAWSNNASFSSICKMTDIYEGSIIRALRREIELLKQ
LVDAAKIIGNQELVDKFDKCTELLNRDFVQVSSLYM
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttgtttgatgtttttgatgaagctcctcaaacagctccaccaaaaatagaa
gaaattaaagaggatattccagccagtacaacaacgagtaacaaaaaaagatctcgtgaa
tctgatgaacaatcaaaaaaagaatctaaaactaatgatattaagaaaactaaaaaacat
gaagatatcaaaccagttgtatttgattcagttgaaattgaaacatcaagagaagttaaa
gcaagtgaaggattattatctaaaccaagtacatcagatgcagataataaattaaaactt
agacatcaagttagacatcaagttgctatcccaccttcatatccatatattccaattggt
gaacacaaaagaaaagaagatgctagaacatatccttttgtattggatccttttcaagat
actgctatttcatgtattgatagaaatgaaagtgttttagtttctgctcatacatcagct
ggtaaaactgttgttgcagaatatgccattgctcaatcattaagagataaacaaagagtt
atttatacatctcctattaaagctttaagtaatcaaaaatatcgtgaattacaagctatt
tttggtgatgttggtttaatgactggtgatgttactattaatcctgatgctggttgttta
gttatgactactgaaattttaagatctatgttatatagaggttcagaagttatgagagaa
gttgcttgggttatattcgatgaagttcattatatgagagataaatcaagaggggttgtt
tgggaagaaactattattttattacctgataaagttcattatgttttcttatctgctact
attccaaatgcaatggaatttgctgaatggatagttaaaattcataatcaaccatgtcat
gttgtttatactgattttagaccaactcctttacaacattatttattccctgctggtggt
gatggtattcatttagttgttgatgaaaagggtacttttagagaagaaaatttccaaaaa
gccatggcaactattggtgataatactggtgatgatccagcctctgctgataaatcaaga
aatggtaaaaagggtaaaacatttaaaggtggaaataaagatggtaaaagtgatatttat
aaaattgttaaaatgatctacatgaaaaaatataatcctgttattgttttttcattttct
aaacgtgaatgtgaatcattagctttaaaaatgtcaaaattggattttaatactgatgaa
gaaagagaagctttagttaaaatttttaataatgctattgaattattacctgaaaatgat
cgtgaattaccacaaattaaaaacattttaccattattgaaaagaggtattggtattcat
cattctggattattaccaattttaaaagaaattattgaaattttatttcaagaaggtttt
ttaaaagtattatttgctactgaaactttttctattggattaaatatgcctgctaaaact
gttgttttcacatctgttcgtaaatgggatggtgttggatttagatgggtttctgggggt
gaatatattcaaatgtcaggtagagccggtagaagaggtttagatgatcgtgggattgtt
attatgatgattgatgaaaaaatggaacctcaagtagctaaaggaatggttaaaggtcaa
gctgatagattagattctgctttccatttgggttataatatgattgttaatttaatgaga
gttgaaggtatttcacctgaatttatgttggaaaattcatttttccaatttcaaaaagct
gccagtgttccagttatggaagataaaatgttgacttataaaaaagaattggaagatatt
catattaatgatgaaggtatcattaaagaatattatgaattacaacaacaattggataaa
tataattcagatgttcaaaaagttattactcatccaggaaatagtttaccatttttacaa
gatggtagagttattaaagttaagattggaaatcaagattatggttggggtatggttact
acatttgttaaaagaaatcgtaagagtcagcaagaagaatttacacctcatgaagcttat
gttgttgaagtattcattacttcaatgtttattgattcaccagttaatttaattaaaaaa
ttcaatccattattacctgaaggtattagacctgctaaatctggagaacaaacaagagct
gaatttattagtataacattagattcaattgaaaaaatcagtactgttagattaagagta
cctgatgattataagagttctactgctaaacgtacattagtgaaaacattaaaagattta
ccaaaaaaattacctgatgggattccattgattgatccagttggaagtatgaaaataacc
gatgaagattttaaaaaattattgaataaaattgatattttagaatctaaaatttctgct
aatccattacataatagtgccagattaaaagatttatatgaacaatattcttataaagtt
aaattggaaacacaaattaaacaacttaaagagaaaatattccaagctgaagcagttgta
caattagaacaattgggtaatatgaaaagagtacttaaaaaattagaacttactggacca
aatgatattgttgaattaaaaggtagagtagcagctgaaatttctacaggtgatgaatta
atgattactgaattgttattttctgggtttttcaatgatttaactccacaacaaatttgt
ggattattatcatgttttattttccaagaaagagctaaagaattaccaaaattaaaacca
gaattagctgaaccagctaaatttattcatgaaacagctagtaaaattgctaaaattagt
aagaattgtaatttagaaattgttgaaaaagattatgttgaatcatttaatttagcatta
gttgaagttgtatttgcatggtctaataatgcttcatttagttcaatttgtaaaatgact
gatatttatgaaggtagtataataagagcattaagaagagaaattgaattattaaaacaa
ttagtcgatgctgctaaaattatcggtaatcaagaattagttgataaatttgataaatgt
actgaattattaaatagagattttgtacaagttagttctttgtatatgtaa
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integrated database retrieval system
