Candida tropicalis: CTRG_05276 Help Entry CTRG_05276        CDS       T01115                                  Name (RefSeq) ATP-dependent helicase NAM7   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism ctp  Candida tropicalis Pathway ctp03013   Nucleocytoplasmic transport ctp03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:ctp00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     CTRG_05276    03015 mRNA surveillance pathway     CTRG_05276  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ctp03019]     CTRG_05276 Enzymes [BR:ctp01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      CTRG_05276     5.6.2.5  RNA 5'-3' helicase      CTRG_05276 Messenger RNA biogenesis [BR:ctp03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      CTRG_05276    mRNA cycle factors     Common to processing body (P body) and stress granule      CTRG_05276 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_19 AAA_30 ResIII Viral_helicase1 SLFN-g3_helicase NPHP3_N DEAD UvrD-helicase Helicase_RecD nSTAND3 AAA_22 PhoH Ribosomal_S13_N AAA_16 Motif Other DBs NCBI-GeneID:  8299597 NCBI-ProteinID:  XP_002550978 UniProt:  C5MGS2 LinkDB All DBs Position Unknown AA seq 993 aa AA seqDB search MSNLLFHNFDKPGATNVDQEVEDFNSTASNIISNHGSSDGNDTNDDADTINQYDEQEMIK YLQDDQQLGEVLSEDEQHIEHSCAYCGIHNPCSVIKCNTCNKWFCNAKTSSSSSHIVTHL IMSRHNQVSLHEESDLGDTTLECYNCGNKNVFMLGFVSAKQESVVVILCRLPCARSKDIN WDTSQWQALIDNRQFLSWLAPSPTEDDLISAKLITPQQISKLEAQWRLNRSATINDIENN DKTEEEVLPILMRYNDAFQYQQSFGPLVKLEADYDKNLKESQALEHIQVKWALGLNNRHL ASFTLSTFETSDLKVAVGDEIILRYSGSLREAWEGHGYILRLPNAYQEEFTLELNTSKIA PPTDLTTDFTAEFVWKGTSYDRMQQAMKDFATDEKSVSSYIYHKLLGHEVEPVEFDIELP KRFSHPKLTELNISQTNAVRSVLQRPLSLIQGPPGTGKTVTSATIIYHLSKLNREKILVC APSNVAVDHLAAKLDLLGLKVVRLTARSREDVESSVSHLALHNLVNSHAKGELKKLIKLK NQVGELSVEDTNKYIKLLRTSEMKALNKCDVVCCTCVGAADKRLSQFKFRSVLIDESTQA SEPEVLIPIVKGAKQVILVGDHQQLGPVILDRKAADAGLKQSLFERLVFLGHVPIRLEVQ YRMHPCLSEFPSNMFYEGSLQNGVTSDDRLIEDSTFPWPVIDTPMMFWANYGREELSASG NSYLNRVEAMNVEKIITKLFKDGIQPEQIGVITPYEGQRAYLVQFMSMNSTLLDKRDQYL DVEITSVDAFQGREKDYIILSCVRANDSQSIGFLSDPRRLNVALTRSKYGLIILGNPRAL CRNRLWNHLLIHFREKGCLVDGPLDNLQLSMVQLNTNPTKPGGNFKSRPKFGAASTVHSS TDFDSASVVSYDNTNTITKLNNELWPALNGNSKFSNDGYHNNNGTNNHLVSNFYNKLNKL DKTYEGGRYNNNENNIEDDIKSITSSFAAGLNF NT seq 2982 nt NT seq  +upstreamnt  +downstreamnt atgagtaacttgttatttcataattttgataaaccaggtgctactaacgttgatcaagag gttgaagatttcaattctactgcttcaaatatcatcagtaatcatggatcaagtgatggc aatgatactaatgatgatgccgataccatcaatcaatacgatgagcaagaaatgattaaa tatttacaggatgatcaacaattgggtgaggttctaagtgaagacgaacaacatattgaa cattcttgtgcttattgtggaattcataacccatgttccgttattaaatgtaatacttgt aacaaatggttttgtaatgcaaaaacaagttcttcaagtagtcatattgtcacacattta atcatgtctcgtcataatcaagttagtcttcatgaagaatcggatttaggggatactaca ttagaatgttacaattgtggtaacaagaatgttttcatgttgggatttgttagtgccaaa caagaatctgttgtggttatattatgtcgtttaccatgtgctagatcaaaagatattaat tgggatacgagtcaatggcaagctttaattgataatcgtcaatttttgtcctggttggct ccgagtccaactgaagatgatttgattagtgccaaattgattactccacagcaaatttct aaattagaagcacaatggagattaaatcgatctgctacaatcaatgatattgagaataat gacaagacagaagaagaagtcttgccgattttaatgagatacaatgatgctttccaatat caacaatcttttggtcctttagtaaaattggaagctgattatgataagaatttaaaggaa tctcaagcattagaacatattcaagtcaaatgggctttgggtttgaataacagacacttg gctagtttcaccttatctacatttgaaaccagtgatttgaaagttgcagttggtgatgaa attattttgaggtatagtgggagtcttagagaagcttgggaagggcatggttatatttta agattaccaaatgcctatcaagaggaattcactttagaattgaacacttccaagattgca ccacctactgatttgacaactgatttcactgccgagtttgtttggaaaggtacttcgtat gaccgtatgcaacaagcaatgaaggattttgctactgatgaaaaatctgtgtcgtcatat atttatcataaattattaggtcatgaagttgaacctgttgagtttgatattgaattacca aagagattctcccatccaaaattgacagaattgaatatttcccaaaccaacgcagttaga tccgttttacaaagaccattatctttgattcaaggtccaccaggtactggtaagactgtt acttctgcgacaattatctatcatttatctaaactcaatagagaaaaaattcttgtttgt gcgccatctaatgttgcagttgatcatttggctgccaaattggatttgttgggattaaaa gttgttagattaactgcaagatcaagagaagatgttgaaagttcagttagtcatttagca ttgcataatttagttaacagtcatgccaagggggaattgaaaaaattgatcaagttgaag aaccaagttggtgaattgtcagttgaagatacaaataagtatattaaattattgagaact tccgaaatgaaagctttaaataaatgtgatgttgtttgttgtacttgtgttggtgctgct gacaagagattatcacagtttaaatttagatctgttttaatcgatgaaagtactcaagcc agtgaacctgaagttttgatcccaattgtgaaaggtgccaagcaagtgattttagttggt gatcatcaacaattagggccagttattttggatagaaaggctgctgatgcagggttgaaa caatcattatttgaaagattggtatttttaggacacgttccaatccgtttagaagttcag tatagaatgcatccatgtttatccgagtttccaagtaatatgttttatgaaggttcttta caaaatggtgttactagtgatgatcgattaattgaagattcaacattcccatggccagtc attgacacaccgatgatgttttgggcaaattatggtcgcgaagaattgagtgctagtggt aattcatatttaaatagagttgaagccatgaatgttgaaaaaatcatcaccaagttgttt aaagatggtattcaaccagaacaaattggggttatcacaccatatgaaggtcaacgtgct tatttagttcaattcatgtcaatgaattctactttgttagacaaacgtgatcaatatctt gatgttgaaatcactagcgttgatgctttccaaggtcgtgaaaaagattacatcattttg agttgtgttagagctaatgattctcaaagtattgggtttttaagtgatcctagaagatta aatgttgctttaactagatccaaatatgggttaattattttgggaaatccaagagccttg tgtcgtaatagattatggaatcacttattgattcattttagggaaaagggttgtttagtt gatggtcctttagataacttacaattatctatggttcaattgaatactaatccaaccaag ccaggtggtaatttcaaatctagacctaaatttggtgctgcttcaactgtacattcatca actgattttgatagtgctagtgttgtatcatatgataacacaaatactataactaaactc aataatgagttatggccagcattaaatggaaacctgaagtttagtaatgatggttatcat aataataatggtactaataatcatttggtttccaatttttacaataaattgaacaaactt gataaaacctatgaaggtggtagatataataacaatgaaaataacattgaagatgatatt aaaagtattactagttcattcgctgccggattgaacttttaa

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