KEGG   Candida tropicalis: CTRG_05350
Entry
CTRG_05350        CDS       T01115                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
ctp  Candida tropicalis
Pathway
ctp03013  Nucleocytoplasmic transport
ctp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ctp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CTRG_05350
  09122 Translation
   03013 Nucleocytoplasmic transport
    CTRG_05350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctp03019]
    CTRG_05350
   03041 Spliceosome [BR:ctp03041]
    CTRG_05350
Messenger RNA biogenesis [BR:ctp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     CTRG_05350
Spliceosome [BR:ctp03041]
 Complex C
  Other components
   EJC/TREX
    CTRG_05350
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CTRG_05350
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_EML_2 WD40_Prp19 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st ANAPC4_WD40 EIF3I Beta-prop_WDR3_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_NUP159_NUP214 Beta-prop_Aladin CFAP251_N Beta-prop_TEP1_2nd Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd WD40_Gbeta WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_WDR75_1st Beta-prop_VPS8 Beta-prop_HPS5 WD40_RFWD3 SdiA-regulated Tricorn_2nd RMC1_N Beta-prop_Vps41 Ge1_WD40 Beta-prop_RSE1_2nd Beta-prop_TEP1_C PEP5_VPS11_N KNTC1_N Beta-prop_RSE1_1st FlaG Beta-prop_pof12
Other DBs
NCBI-GeneID: 8299674
NCBI-ProteinID: XP_002551052
UniProt: C5MGZ6
LinkDB
Position
Unknown
AA seq 375 aa
MTTTNVNDNNLAFFKSLTPYVIRDKPVGSYMGNSEVITMAINPTGNRIVYSRTDKTIRIW
KSTPDSAVDPKIIIDPHNKAVESISFNPKTEFSFATVGKDEYVKIWNSQNGDKIREIKCD
FDTLKLVRYSNDGKLLIVVDRTSNIMILNVEMNYKLVHTFKVNEHVYDLKWFHHEHQFFL
IAMHDGSVLLYEVAEETREDEEERIIYSTKLRSKIKGHNSSITSIAISPRGTYFCLGSSE
GVVSVWNVEGTLINSHVITDVDQSISHLSCSKDGAYLTVAYDSDSNSRVYDYESGQLMYE
IPNTSSGSQTFSSANWYPNKTGFICTSDHGTTVTIMKKLDDGRKLEDGRKLDDGRKRVQR
DQRDQRDQRDQRRRI
NT seq 1128 nt   +upstreamnt  +downstreamnt
atgaccaccactaacgtaaatgataacaatctagctttttttaagagtctcactccatat
gtaattcgagataagccagtgggaagttacatgggaaattcagaagtcattaccatggcc
attaatccaacaggaaatagaattgtatattctcgaactgataaaaccattagaatatgg
aaatcaactcctgattctgcagtagatcctaagattataattgatcctcataataaagca
gttgaaagtatttcatttaatccaaaaactgaatttctgtttgcaactgttggtaaagat
gaatatgttaaaatctggaattcccaaaatggtgataaaattcgtgaaatcaaatgtgat
tttgatactttgaaattggtaagatattccaatgatggtaaattattgattgttgtggat
agaacatcaaatattatgatacttaatgttgaaatgaattacaaattggttcatacattc
aaagttaatgaacatgtttatgatttaaagtggttccatcatgaacatcaattctttctt
attgcaatgcacgacgggagtgttcttctatatgaagtagcagaagaaacaagagaagat
gaagaagaacgtataatatattcaaccaaattgagatccaaaattaaaggacacaattca
tcaattacttcaattgcaatttcaccaaggggaacatatttctgtcttggaagtagtgaa
ggtgtggttagtgtctggaatgttgaaggaacattaataaatctgcatgttatcaccgat
gttgatcaaagtatttcacatttgagttgtagtaaagatggtgcttatcttacagttgct
tatgattctgatagcaacctgcgagtttatgattatgaatctggacaattgatgtatgag
attcctaatacctcaagtggaagtcaaacattcagcagtgctaattggtatcctaacaaa
actggtttcatatgcaccagtgatcatggaactacagtcactataatgaaaaaactcgat
gatggacgaaaacttgaagatggacgaaaactagatgatggacgaaaacgagtccaaaga
gatcaaagagaccaaagagatcaaagggatcaaagaagaaggatatag

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