Candida tropicalis: CTRG_06125
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Entry
CTRG_06125 CDS
T01115
Name
(RefSeq) conserved hypothetical protein
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
ctp
Candida tropicalis
Pathway
ctp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTRG_06125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctp03019
]
CTRG_06125
Messenger RNA biogenesis [BR:
ctp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CTRG_06125
mRNA degradation factors
3'-5' decay
Pan complex
CTRG_06125
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
EF-hand_2
TFIIA
Motif
Other DBs
NCBI-GeneID:
8298775
NCBI-ProteinID:
XP_002546647
UniProt:
C5MJ82
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MNINLDTAKETLCKNILIYGYCKFENKGCAFSHNRQQKPAPQPQQQDQESPQDSGSASNT
NNNAGFPDSATSTVSSTMSSNDAASKKKYNLNTPSFQPGVTGLTSKFATLSPKLKEIPVF
KPDNGHATSDSTTNQRPFTSKKFNVSTPSFTPSGFDFGNNGNSNNTSSSPLTISSAPLAQ
QQPPSQQQQQQQQPVQQQQNVLMQAPIPSSSSLASSSQHLPSQQVPPQQQQHTGHAMGIP
HSSGSSNPYFPNSLGISTPTAMGQVGTPGGIVPPAVATPTSNMPGNGGAGAVGGQQPMYP
LQYHLYAPAPPPRLTIPLQPHELNSQAMFISNELREYLHKKNEASLQTLSHSNLPEHVNQ
YHSLVPIDKSYEPISKLWMGKNSLIFKVYSNYDGNLYVLRKIEPCNEIVNDKPFGTIKKW
KSIKNANIVGLQDAFTTMAFNNSQNTNNSLCIIYDYYPNSVSLLEQHKKGLRVEPITEDL
LWCYLIQLINAITVIHQNGLTARSTIDLSKIIVTNKHRIRLGSVGISDILEYNEENEVDI
KEYQVQDIKNISNVLVELSVLLLPVNMRQSANIYNSLKSSTKLSEEFVNILQELHDSDET
FDLEEFSKKLSGKMLTVINNLEDSNDFMESQLGSELENARLFRLMTKLNYLIYDDSDKTG
VATGNNKILRLFLNYLYNSYDSSNNKNKKVLNLNKVLINLNKLDCGIDEKLLLINKDECI
IISYKELKEIIDNKFRLMRE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgaatataaatctagataccgctaaggaaaccctttgcaagaatatattgatatatgga
tattgtaaatttgaaaacaaaggatgtgccttcagtcataatcgccaacagaaaccagca
ccacaaccacagcaacaagatcaggaatcacctcaagattctggatcggccagtaataca
aacaacaatgctggtttcccagattcagctacttcaacagtttcttcaaccatgtcttcg
aatgatgcagcatctaaaaagaaatacaatttgaacactccttctttccaaccaggagtt
acaggattgacaagtaaatttgcaactttatcaccaaaactaaaggaaattcccgtgttt
aaaccagacaatggacacgcgacttcggattcgacaacaaaccaacgaccatttacatca
aagaagtttaatgtcagtactccatcattcacaccatctggttttgattttggtaataat
ggcaatagtaataatacgtcatcttcaccattgacaatctcatctgctcctcttgcccaa
caacaaccaccgtcacaacaacaacaacagcagcaacagcctgtgcaacaacaacaaaat
gttttaatgcaagctccaattccttcttcttcttctttagcatcatcatcccaacatctt
ccgtcacaacaagtaccaccacaacagcaacaacatactggacatgcaatggggattcca
cattcttctggttcgtcaaatccatattttccaaatagcttaggcatatcaacccctaca
gcaatgggacaagtcggtacaccaggtggtattgttcctccagctgttgcaactccaacc
tcaaatatgccggggaatggtggtgctggtgctgttggtggtcaacaaccaatgtaccca
ttgcaatatcatttgtatgccccagctccacctccaagattaactattccattgcagccg
cacgaacttaatagtcaagcgatgtttatttcaaacgagttgcgtgaatacttgcataaa
aagaacgaagccagtttgcaaacattaagtcatctgaatttgccagaacatgtcaaccaa
taccattcattagttccaattgataaatcatatgaaccaatttctaaactctggatgggg
aagaatagtttgatatttaaagtttacagtaattatgatgggaacttgtatgttttaaga
aagattgaaccatgtaatgagattgttaatgacaagccatttggtaccatcaagaaatgg
aaaagtataaagaatgccaatattgttggtttacaagatgcttttaccaccatggcgttt
aacaattcacagaacaccaacaattcattgtgtattatttatgactattatccaaacagt
gtgagtttattagagcaacacaaaaaggggttacgagttgagccaattactgaagacttg
ttatggtgttacttgattcagttgatcaatgcaattacggttattcatcaaaatggattg
acggcaagatcaaccatagatttgagtaagattattgttaccaataaacatagaataaga
ttgggttctgtgggtatcagtgacattcttgaatacaatgaagagaatgaagttgacatc
aaagagtaccaagtccaagatattaagaacatttccaatgtattggttgaattaagtgta
ttgttattaccagttaatatgaggcaaagtgctaatatttacaacagtttgaaatcctca
accaagttgagtgaagaatttgtcaatatattgcaagaattacatgactcagatgaaacg
tttgatctagaagagtttagtaagaagttatctggtaagatgcttactgttatcaacaat
ttggaagattctaatgattttatggagagccagttgggatcggagttggagaatgctaga
ttatttagattgatgactaaattgaactatttgatttacgatgatagtgataaaacagga
gttgcaacaggaaataataagattttgagattatttttaaactatctatacaatagttat
gattccagtaataataagaataagaaggtgcttaatttgaataaagtgttgataaatttg
aacaagttggattgtggaattgatgaaaagttgttgttgattaataaagatgagtgtatt
attataagttataaagaattgaaggagattattgataacaagtttagattaatgagagaa
taa
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