Candida tropicalis: CTRG_06143
Help
Entry
CTRG_06143 CDS
T01115
Name
(RefSeq) pre-mRNA splicing factor ATP-dependent RNA helicase PRP22
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ctp
Candida tropicalis
Pathway
ctp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTRG_06143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctp03041
]
CTRG_06143
Enzymes [BR:
ctp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CTRG_06143
Spliceosome [BR:
ctp03041
]
Complex C
Other components
Step II factors
CTRG_06143
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
ABC_tran
NB-ARC
nSTAND_NTPase5
ResIII
ATPase
SRP54
DDR
AAA_30
Flavi_DEAD
AAA_16
PhoH
AAA_11
AAA_23
Motif
Other DBs
NCBI-GeneID:
8300004
NCBI-ProteinID:
XP_002546665
UniProt:
C5MJA0
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
MNTQPDKQLLSIVQKHLGLPDNDENLTLIAQFLTNLYGKSTNQSWDDFRKLVDENGGDEF
PDVFLKEAFDKISKKRPLGPKVNETTNKKTIILSPEKPPQVGDVLPGIVEGIQAYGAFIK
LGNTSGLCHISQISFDGSKIASVSDYLKPRQAVYVKITDIQNQGSRKKISLSMRGIDQVT
GEVKITEPRGRPQERQTRLKRKLTSPERWEIRQLIKSGAISADDYPDLDDEGQDESHAQS
TLEPEVEIHIEMNESKPEFLKGMARSKPLMTVDPTPPQTGSLNTAAEKGSKFAKEFREEK
LRQKKLKEKEEKSKTDTTDPLFQATESVKDVDLDPATESFISKWKQSHKNESFGKRTSLP
IEEQRRSLPVYAMRSTLVESIRDNQFVVIVGETGSGKTTQIVQYIYEEHMNVIDGKTKVI
GCTQPRRVAATSVAKRVAEEVGCKVGDKVGYTVRFDDQTGPDTVIKYMTDGMLEREALND
PSMSKYSLIMLDEAHERTIATDVLFALLKDAAKQNPNLKVVVTSATLDSNKFSKYFNNCP
VINIPGRTFPVEVLYTKEPEMDYLAAALDSVMQIHISEPAGDILVFLTGQEEIDTSCEAL
NERMKILGDSVPELIVLPVYSALPSEMQTRIFEPTPPGSRKVILATNIAETSITIDGIYY
VVDPGFVKINSYDPKLGMDSLKVRPISKAQANQRSGRAGRTGPGKCYRLYTEQAYQKEMI
ANTIPEIQRQNLSHTILMLKAMGIEDLINFEFMDPPSTSTLLTALEDLYILDALDDEGHL
TGLGRRMAELPMEPALAKTLIKSAEYGCSEEILTIVAMLSVQTIFYRPKAQSALADQRKA
RFHHPYGDHLTLLNVFQSWYRNNYSKSWCQENFIQERSMRRAMDVRNQLKQIMTRFKYPI
LSCGNNIEKIRRTLCSGYFKNSAKRQEGEGYKTLNEGTSVYLHPSSSLYGKNPEYAIYHT
LILTSKEYMHCVSVIDPQWLYELAPKYYKQADANTIREAKKKQKIEPLFNSHNRDSWRLT
KQRKPKR
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgaatacacaacctgataaacaactactttcaatagtacagaaacacttagggttacca
gataatgatgagaatttaactttaattgcacagtttctaacaaatctatacggaaaatct
accaatcaatcatgggacgatttccgaaaactagttgatgaaaatgggggagatgagttc
ccagatgtattcctaaaagaagcctttgataagatatcaaagaaaaggccacttggtcct
aaagttaacgaaacaaccaacaagaaaacaattattctttctccagagaaaccaccccaa
gtaggtgatgtactaccaggaatagttgaaggaatacaggcatacggggcgtttattaaa
cttggcaatacatccggcctatgtcatatatcacagatatcatttgatggatctaaaata
gcatcagtatcggattacctaaaaccaagacaagccgtgtatgtgaagattactgatatc
cagaaccaaggcagtagaaagaaaatatcattatcaatgagaggaatcgatcaagtaact
ggggaggtcaaaattactgaaccgagaggccgaccacaagaaagacaaacacgattgaag
cgaaaattaacatctcccgaaagatgggagattcgtcagcttattaaatcaggagcaatt
tctgctgatgattatccggatttggacgatgaaggtcaagatgaatcccatgcacagtct
acgttagaacctgaggtggagatacatatcgaaatgaacgagtctaaaccagagttttta
aaaggcatggcaagatcaaagccgcttatgacggtggaccctactcctccacagacagga
tcattaaacacagccgctgaaaagggatcaaaattcgctaaagagttcagagaagagaaa
cttcgacaaaagaagctaaaggaaaaggaagaaaagtcaaaaactgatactacagatcca
cttttccaagccacagaatcagtaaaagatgttgatttagaccctgctactgaatcgttc
atttccaaatggaaacaatcccataagaatgaatcctttggtaaacgtacatcccttcca
attgaagagcaaagaagatcccttccagtatatgccatgaggtctacattagttgaaagt
attcgagataatcaatttgtggttattgttggggaaactggttccggtaagacaacccaa
atcgtgcagtatatatacgaggagcacatgaatgtcatcgacggaaagacaaaagttatt
gggtgtactcaaccgagacgtgttgcggcgacatctgttgccaaaagagttgccgaagaa
gttggttgcaaagtcggagacaaagttgggtataccgttagatttgatgaccaaactgga
cctgatacagtcatcaagtatatgacagatggtatgttggaaagggaagcgttaaacgat
ccatccatgagtaaatattcactaattatgttggatgaagcgcacgaaagaaccattgcc
actgatgttttgtttgcgttgcttaaagatgctgcaaaacagaaccccaatttaaaagtt
gttgtaacatcagctacattagattccaataaattttctaaatacttcaacaattgtcca
gttataaatatacccggaagaacattcccagttgaagtgttgtacacaaaagagccagaa
atggattatcttgctgctgcgcttgattctgtcatgcaaatacatatttctgaaccagca
ggtgacattttagtgtttcttacggggcaagaggagatcgataccagttgtgaggcatta
aatgagaggatgaaaatcttgggtgacagcgtacccgagttgattgtgcttcctgtctat
tcggcattaccttcggaaatgcagacaagaatttttgagcctacaccaccagggtcacga
aaagttattttagctacaaacattgctgaaacctccatcaccattgatggtatatattat
gttgttgatcctgggtttgtaaagataaatctgtatgatccaaaactaggaatggattcc
ttgaaagttcgcccaattagcaaagcacaagcgaatcaaagaagtggtagagctggtaga
actggacctggaaaatgttatagattatacactgaacaagcataccaaaaagaaatgatc
gccaatacgattcctgagatccaaagacagaacttgtcgcataccattttgatgcttaaa
gccatgggaattgaagatttgatcaactttgagtttatggatcctccatctacaagtaca
ttattaactgcattggaagacttgtatattcttgatgcgttggacgatgaaggacacctc
actggattaggtagaagaatggccgaattacccatggagccagcattggctaaaacgttg
atcaaatcagccgagtatggctgttcagaggaaattcttaccatcgttgctatgctttcg
gtgcagacgatattctatcgtcccaaagcacaatctgcattagcagatcaaagaaaggca
cgatttcatcacccctatggagatcatttgactttgttgaatgtgttccaactgtggtat
cgcaataattacagcaagtcttggtgtcaggagaattttattcaggagagaagtatgcgc
agagcgatggatgttagaaaccaattgaagcagataatgactagatttaagtatcctatc
ctttcatgtggaaataatattgagaaaatcagaaggacgttgtgttcgggttatttcaag
aattctgccaagagacaagaaggcgagggttacaagacgttgaatgaaggaactctggtg
tatttgcacccatcatcgtcgctatatggtaaaaaccccgagtacgctatctatcacaca
ttaattctcacttctaaagagtatatgcactgtgtgagtgtgattgatccccaatggttg
tatgaattagcgccaaaatactacaagcaagcggatgccaatactattagagaagcaaag
aagaaacagaaaatagaaccattattcaatagccataatagggattcttggagacttact
aagcaacgtaagcccaaaagataa
DBGET
integrated database retrieval system
