Chlamydia trachomatis D/UW-3/CX: CT_397
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Entry
CT_397 CDS
T00017
Symbol
vacB
Name
(RefSeq) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ctr
Chlamydia trachomatis D/UW-3/CX
Pathway
ctr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CT_397 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctr03019
]
CT_397 (vacB)
03016 Transfer RNA biogenesis [BR:
ctr03016
]
CT_397 (vacB)
Enzymes [BR:
ctr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CT_397 (vacB)
Messenger RNA biogenesis [BR:
ctr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CT_397 (vacB)
Transfer RNA biogenesis [BR:
ctr03016
]
Prokaryotic type
tRNA degradation factors
CT_397 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
Motif
Other DBs
NCBI-GeneID:
884714
NCBI-ProteinID:
NP_219907
UniProt:
O84402
LinkDB
All DBs
Position
453889..455973
Genome browser
AA seq
694 aa
AA seq
DB search
MGKAKNKKKFLKNRKQVLVPGTLFVHSRKGFGFVSPDQPELYPFDIFISASDLKGALDGD
HVLVALPFSLRGGEKRKGVIHKVLSRGKTVLVGTIVSLINPTLAMVYVNTIGPEHPLKAE
LLPKRTYKLGDRLLLKTPVWKENYPSREPPPLAMLEFIGNISNAKTDFPVIKAEFSITEE
FPDAVVQEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILG
VHIADVSHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVF
MTFSKEGFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIR
EQRGCTRLVLPSFTMSLDNLQEPVALIENKQTAAHKLIEEFMLKANEVIAYHISHQGITM
PFRTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVR
SMKTASYSTENKGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEEEHLEQIVRACS
SQERIAAKAEGAFVNIKKARFLKKFIEEQPATLYKAFIITASPEGISFVLPEFCHEGFIP
AAKLPQAYVLQTKIGLEELPEHLRPGAVISVQLASVTLLTQSIEWTLVEATTKAKAKRTS
KKKKTESVTTKEKKKSPAKKKKGATKTKKGSGKN
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgggaaaagctaaaaacaaaaagaaatttctaaaaaatagaaagcaggttctggttcct
ggtaccttattcgtccattctagaaagggctttggatttgtatccccagatcaaccggag
ttatatccttttgatattttcatctcagctagcgacttaaaaggtgctttggatggagat
catgttctcgtggctctccccttttctcttcgtggaggagaaaaaagaaaaggggtcatt
cataaagttctttctcgggggaaaacagtcttagtagggactattgtctctcttatcaat
ccaactctagctatggtttatgtgaataccataggccctgaacatcctttaaaagccgag
ctcttacctaaaaggacttacaaactaggagatcggttgttactaaaaactcctgtgtgg
aaggagaattatcccagtagagaaccacctcccttggctatgctggaatttataggcaat
atctctaatgctaagacagattttcctgttattaaagccgaattctctattacagaagag
ttccccgatgcagtggtacaggaagctagtcagttcttacaaaagcacgtaacacaagcg
ttacactcgaggaaagatctccgagatttgttatgtttcaccatagactcttcctctgct
aaggactttgacgatgcagtctcactaacttatgatcatgagggaaactatattctaggt
gttcatattgcggacgtctcccactacgtgactccaaattccgctttggatagagaagct
gctaaacggtgcaactcgatctacttccctggaaaagtcatccctatgctgccttcagcc
ctttctgacaatctgtgcagcttaaaacctaatgtggatcgcttagctgtatccgtattt
atgactttctctaaagagggattcctttctgactaccgaattttgcgtagcgtcattcgt
agtaaataccgtatgacatacgatgaggtagatgaaattatcgagaaaaaacagactcac
cctatttctaaaaccattttaaagatggctgaattgagccgtattttttctgacatccga
gaacaacgtggatgcacgcgtctcgttcttccttcattcacgatgtctcttgataattta
caagagcctgtagcccttatcgaaaacaaacaaacagctgctcataaactcattgaagag
tttatgctgaaagcgaatgaagtgatagcctatcacatttcccatcagggaataaccatg
ccattccgcacacatgaacctcctaatgaagaaagtctccttgtgtttcaagagacagca
aaggctatgggcttcaccattacacaaaccccggcgcaagaaccagattaccaatattta
ttgcaggaaacgactgcaggccatcctttggagccaatccttcattctcagtttgtacgc
agtatgaagacggcttcctattctacggaaaacaaaggccattacggtctgtgcttagac
tactacacacactttactagcccgatccgccgatacgtggatttgatcgttcaccgactg
cttttccatcctctctctgtagaagaagagcatcttgaacaaattgttcgagcctgctca
tcccaagaacgcattgcagcgaaagctgagggagcttttgtaaatattaagaaggctcgc
ttcttgaaaaaattcatagaagagcagcctgcaactctttataaagctttcattattacg
gcatccccggaagggatctcttttgtcctcccagaattttgtcatgaaggtttcattcct
gcggctaaactacctcaagcgtacgtccttcaaacaaaaataggattagaagaacttcct
gagcatttgcgtcctggagctgttatttctgtgcaactggcttctgtcaccttgctcaca
cagtctatcgagtggacgttggttgaagccacaactaaagctaaagcaaagcgtacctct
aaaaagaaaaaaacagaatctgtcacgactaaagaaaagaaaaagagtcctgctaaaaag
aaaaaaggagctaccaaaacgaagaagggcagtgggaaaaattag
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