Chlamydia trachomatis F/SotonF3: SOTONF3_00434
Help
Entry
SOTONF3_00434 CDS
T02552
Name
(GenBank) chlamydial polymorphic outer membrane protein repeat
Organism
ctrf
Chlamydia trachomatis F/SotonF3
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ChlamPMP_M
Chlam_PMP
Autotransporter
Motif
Other DBs
NCBI-ProteinID:
CCP57092
LinkDB
All DBs
Position
480549..485903
Genome browser
AA seq
1784 aa
AA seq
DB search
MKFLSATAVFAAALSSVTEASSIQDQIKNTDCNVSKVGYSTSQAFTDMMLADNTEYRAAD
SVSFYDFSTSSGLPRKHLSSSSEASPTTEGVSSSSSGENTENSQDSAPSSGETDEKTEEE
LDNGGIIYAREKLTISESQDSLSNQSIELHDNSIFFGEGEVIFDHRVALKNGGAIYGEKE
VVFENIKSLLVEVNIAVEKGGSVYAKERVSLENVTEATFSSNGGEQGGGGIYSEQDVLIS
DCNNVHFQGNAAGATAVKQCLDEEMIVLLAECVDSLSEDTLDSTPETEQTESNGNQDGSS
ETEDTQVSESPESTPSPDDVLGKGGGIYTEKSLTITGITGTIDFVSNIATDSGAGVFTKE
NLSCTNTNSLQFLKNSAGQHGGGAYVTQTMSVTNTTSESITTPPLVGEVIFSENTAKGHG
GGICTNKLSLSNLKTVTLTKNSAKECGGAIFTDLASIPTTDTPESSTPSSSSPASTPEVV
ASAKINRFFASTAEPAAPSLTEAESDQTDQTETSDTNGDIDVSIENILNVAINQNTSAKK
GGAIYGKKAKLSRINNLELSGNSSQDVGGGLCLTESVEFDAIGSLLSHYNSAAKEGGAIH
SKTVTLSNLKSTFTFADNTVKAIVESTPEAPEEIPPVEGEESTATEDPNSNTEGSSASTN
LKGSQGDTADTGTGDVNNESQDTSDTGNAESGEQLQDSTQSNEENALPNSNIDQSNENTD
ESSDSHTEEITDESVSSSSESGSSTPQDGGAASSGAPSGDQSISANACLAKSYAASTDSS
PVSNSSGLEEPVTSSSDSDVTASSDNPDSSSSGDSAGDSEELTETEAGSTTETPTLIGGG
AIYGETVKIENFSGQGIFSGNKAIDNTTEGSSSKSDVLGGAVYAKTLFNLDSGSSRRTVT
FSGNTVSSQSTTGQVAGGAIYSPTVTIATPVVFSKNSATNNANNATDTQRKDTFGGAIGA
TSAVSLSGGAHFLENVADLGSAIGLVPGTQNTETVKLESGSYYFEKNKALKRATIYAPVV
SIKAYTATFNQNRSLEEGSAIYFTKEASIESLGSVLFTGNLVTPTLSTTIEGTPATTSGD
VTKYGAAIFGQIASSNGSQTDNLPLKLIASGGNICFRNNEYRPTSSDTGTSTFCSIAGDV
KLTMQAAKGKTISFFDAIRTSTKKTGTQATAYDTLDINKSEDSETVNSAFTGTILFSSEL
HENKSYIPQNVVLHSGSLVLKPNTELHVISFEQKEGSSLVMTPGSVLSNQTVADGALVIN
NMTIDLSSVEKNGIAEGNIFTPPELRIVDTTTSGSGGTPSTDSESNQNSDDTEEQNNNDA
SNQGESANGSSSPAVAVAHTSRTRNFAAAATATPTTTPTATTTTSNQVILGGEIKLIDPN
GTFFQNPALRSDQQISLLVLPTDSSKMQAQKIVLTGNIAPQKGYTGTLTLDPDQLQNGTI
SVLWKFDSYRQWAYVPRDNHFYANSILGSQMSMVTVKQGLLNDKMNLARFDEVSYNNLWI
SGLGTMLSQVGTPTSEEFTYYSRGASVALDAKPAHDVIVGAAFSKMIGKTKSLKRENNYT
HKGSEYSYQASVYGGKPFHFVINKKTEKSLPLLLQGVISYGYIKHDTVTHYPTIRERNKG
EWEDLGWLTALRVSSVLRTPAQGDTKRITVYGELEYSSIRQKQFTETEYDPRYFDNCTYR
NLAIPMGLAFEGELSGNDILMYNRFSVAYMPSIYRNSPTCKYQVLSSGEGGEIICGVPTR
NSARGEYSTQLYLGPLWTLYGSYTIEADAHTLAHMMNCGARMTF
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttctgtcagctactgctgtatttgctgcagcactctcctccgttactgaggcg
agctcgatccaagatcaaataaagaataccgactgcaatgttagcaaagtaggatattca
acttctcaagcatttactgatatgatgctagcagataacacagagtatcgagctgctgat
agtgtttcattctatgacttttcgacatcttccggattacctagaaaacatcttagtagt
agtagtgaagcttctccaacgacagaaggagtgtcttcatcttcatctggagaaaatact
gagaattcacaagattcagctccctcttctggagaaactgatgagaaaacagaagaagaa
ctagacaatggcggaatcatttatgctagagagaaactaactatctcagaatctcaggac
tctctctctaatcaaagcatagaactccatgacaatagtattttcttcggagaaggtgaa
gttatctttgatcacagagttgccctcaaaaacggaggagctatttatggagagaaagag
gtagtctttgaaaacataaaatctctactagtagaagtaaatatcgcggtcgagaaaggg
ggtagcgtctatgcaaaagaacgagtatctttagaaaatgttaccgaagcaaccttctcc
tccaatggtggggaacaaggtggtggtggaatctattcagaacaggatgtgttaatcagt
gattgcaacaatgtacatttccaagggaatgctgcaggagcaacagcagtaaaacaatgt
ctggatgaagaaatgatcgtattgctcgcagaatgcgttgatagcttatccgaagataca
ctggatagcactccagaaacggaacagactgagtcaaatggaaatcaagacggttcgtct
gaaacagaagatacacaagtatcagaatcaccagaatcaactcctagccccgacgatgtt
ttaggtaaaggtggtggtatctatacagaaaaatctttgaccatcactggaattacaggg
actatagattttgtcagtaacatagctaccgattctggagcaggtgtattcactaaagaa
aacttgtcttgcaccaacacgaatagcctacagtttttgaaaaactcggcaggtcaacat
ggaggaggagcctacgttactcaaaccatgtctgttactaatacaactagtgaaagtata
actactccccctctcgtaggagaagtgattttctctgaaaatacagctaaagggcacggt
ggtggtatctgcactaacaaactttctttatctaatttaaaaacggtgactctcactaaa
aactctgcaaaggagtgtggaggagctatttttacagatctagcatctataccaacaaca
gataccccagaatcttctaccccctcttcctcctcgcctgcaagcactcctgaagtagtt
gcttctgctaaaataaatcgattctttgcctctacggcagaaccggcagccccttctcta
acagaggctgagtctgatcaaacggatcaaacagaaacttctgatactaatggcgatata
gacgtgtcgattgagaacattttgaatgtcgctatcaatcaaaacacttctgcgaaaaaa
ggaggggctatttacgggaaaaaagctaaactttcccgtattaacaatcttgaactttca
gggaattcatcccaggatgtaggaggaggtctctgtttaactgaaagcgtagaatttgat
gcaattggatcgctcttatcccactataactctgctgctaaagaaggtggggctattcat
tctaaaacggttactctatctaacctcaagtctaccttcacttttgcagataacactgtt
aaagcaatagtagaaagcactcctgaagctccagaagagattcctccagtagaaggagaa
gagtctacagcaacagaagatccgaattctaatacagaaggaagttcagctagcactaac
cttaaaggatctcaaggggatactgctgatacagggactggtgatgttaacaatgagtct
caagacacatcggatactggaaacgctgaatctggagaacaactacaagattctacacaa
tctaatgaagaaaatgcccttcccaatagtaatattgatcaatctaacgaaaacacagac
gaatcatctgatagccacactgaggaaataactgacgagagtgtctcatcgtcctctgaa
agtggatcatctactcctcaagatggaggagcagcttcttcaggggctccctcaggagat
caatctatctctgcaaacgcttgtttagctaaaagctatgctgcgagtactgatagctcc
cccgtatctaattcttcaggtttagaagagcctgtcacttcttcttcagattcagacgtt
actgcatcttctgataatccagactcttcctcatctggagatagcgctggagactctgaa
gaactgactgagacagaagctggttctacaacagaaactcctactttaataggaggaggt
gctatctatggagaaactgttaagattgagaacttctctggccaaggaatattttctgga
aacaaagctatcgataacaccacagaaggctcctcttccaaatctgacgtcctcggaggt
gcggtctatgctaaaacattgtttaatctcgatagcgggagctctagacgaactgtcacc
ttctccgggaatactgtctcttctcaatctacaacaggtcaggttgctggaggagctatc
tactctcctactgtaaccattgctactcctgtagtattttctaaaaactctgcaacaaac
aatgctaataacgctacagatactcagagaaaagacaccttcggaggagctatcggagct
acttctgctgtttctctatcaggaggggctcatttcttagaaaacgttgctgacctcgga
tctgctattgggttggtgccaggcacacaaaatacagaaacagtgaaattagagtctggc
tcctactactttgaaaaaaataaagctttaaaacgagctactatttacgcacctgtcgtt
tccattaaagcctatactgcgacatttaaccaaaacagatctctagaagaaggaagcgcg
atttactttacaaaagaagcatctattgagtctttaggctctgttctcttcacaggaaac
ttagtaaccccaacgctaagcacaactatagaaggcacaccagccacaacctcaggagat
gtaacaaaatatggtgctgctatctttggacaaatagcaagctcaaacggatctcagacg
gataaccttcccctgaaactcattgcttcaggaggaaatatttgtttccgaaacaatgaa
taccgtcctacttcttctgataccggaacctctactttctgtagtattgcgggagatgtt
aaattaaccatgcaagctgcaaaagggaaaacgatcagtttctttgatgcaatccggacc
tctactaagaaaacaggtacacaggcaactgcctacgatactctcgatattaataaatct
gaggattcagaaactgtaaactctgcgtttacaggaacgattctgttctcctctgaatta
catgaaaataaatcctatattccacaaaacgtagttctacacagtggatctcttgtattg
aagccaaataccgagcttcatgtcatttcttttgagcagaaagaaggctcttctctcgtt
atgacacctggatctgttctttcgaaccagactgttgctgatggagctttggtcataaat
aacatgaccattgatttatccagcgtagagaaaaatggtattgctgaaggaaatatcttt
actcctccagaattgagaatcgtagacactactacaagtggaagcggtggaaccccatct
acagatagtgaaagtaaccagaatagtgatgataccgaggagcaaaacaataatgacgcc
tcgaatcaaggagaaagcgcgaatggatcgtcttctcctgcagtagctgttgcacacaca
tctcgtacaagaaactttgccgctgcagctacagccacacctacgacaacaccaacggct
acaactacaacaagcaaccaagtaatcctaggaggagaaattaaactcatcgatcctaat
gggaccttcttccagaaccctgcattaagatccgaccaacaaatctccttgttagtgctc
cctacagactcatcaaaaatgcaagctcagaaaatagtactgacgggtaatattgctcct
cagaaaggatatacaggaacactcactctggatcctgatcaactacaaaatggaacgatc
tcagtgctctggaaatttgactcttatagacaatgggcttatgtacctagagacaatcat
ttttatgcgaactcgattctgggatctcaaatgtcaatggtcacagtcaaacaaggcttg
ctcaacgataaaatgaatctagctcgctttgatgaagttagctataacaacctgtggata
tcaggactaggaacgatgctatcgcaagtaggaacacctacttctgaagaattcacttat
tacagcagaggagcttctgttgccttagatgctaaaccagcccatgatgtgattgttgga
gctgcatttagtaagatgatcgggaaaacaaaatccttgaaaagagagaataactacact
cacaaaggatccgaatattcttaccaagcatcggtatacggaggcaaaccattccacttt
gtaatcaataaaaaaacggaaaaatcgctaccgctattgttacaaggagtcatctcttac
ggatatatcaaacatgatacagtgactcactatccaacgatccgtgaacgaaacaaagga
gaatgggaagacttaggatggctgacagctctccgtgtctcctctgtcttaagaactcct
gcacaaggggatactaaacgtatcactgtttacggagaattggaatactccagtatccgt
cagaaacaattcacagaaacagaatacgatcctcgttacttcgacaactgcacctataga
aacttagcaattcctatggggttagcattcgaaggagagctctctggtaacgatattttg
atgtacaacagattctctgtagcatacatgccatcaatctatcgaaattctccaacatgc
aaataccaagtgctctcttcaggagaaggcggagaaattatttgtggagtaccgacaaga
aactcagctcgcggagaatacagcacgcagctgtacctgggacctttgtggactctgtat
ggatcctacacgatagaagcagacgcacatacactagctcatatgatgaactgcggtgct
cgtatgacattctaa
DBGET
integrated database retrieval system
