Chlamydia trachomatis A/5291: A5291_00805
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Entry
A5291_00805 CDS
T02563
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctrx
Chlamydia trachomatis A/5291
Pathway
ctrx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctrx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A5291_00805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctrx03400
]
A5291_00805
Enzymes [BR:
ctrx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A5291_00805
DNA repair and recombination proteins [BR:
ctrx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A5291_00805
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
nSTAND_NTPase5
AAA_30
DUF3638
AAA_19
RecG_dom3_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
CCP49045
LinkDB
All DBs
Position
complement(872047..875286)
Genome browser
AA seq
1079 aa
AA seq
DB search
MDFDPTSIDFSSFPLLKDTKLPSLVENLHSGARSFVIAKLFKELKRSIVVITTLAKLDDL
FEDLTTLLAESPLEFPASEIDLSPKLVNVDAVGKRDHILYSLQKQSAPVICVTTLKALSE
RTPSPESMIRDHLELRVGEELDPDTLLDLCKSLGYRHEALAREKGDFAFRGGIVDIFPLS
SPEPFRIEFWGDRVSSIRSYNPSDQLSTGKLSQITISPATAIIPTNKLSHSLLDYFKAFP
LCIFDGLSSLEDNFSDIAGILASLPKRFMPIQDLCQRILKEFTPLFFEEKTFPNLISHKD
TGFSIEAFHKKISVQRVSLPFIYPPALIETSGEQNPLLAFLKTFQDFCAGRTLSLALYCS
NTKSLKEAHDLAAACIPNTQIYDHPTTLSSSFALVEAGFAAVSLSEFAASKVLRRQKQRN
YFSTTTEEVYIPVPGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYADKARLYVPSD
QAYLISRYVGASEKAPDLHHLNGAKWRRSRELSEKSVILYAEKLIQMEAQRSTANSFIYP
PHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVK
AVCDGHKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGR
IDILIGTHKVINKAIEFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTL
YLSLSGARDLSLITMPPLDRLPVSTFVMEHSEETLSAAIRHELLRGGQVYVIHNRIESIF
RLGETIRTLIPEARIGVAHGQMHANELASIFYKFKTQQTNVLVATALIENGIDIPNANTI
LIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQEYGGGMK
IALHDLEIRGAGNILGTDQSGHISAVGFNLYCKLLKKAVAALKHKQKPMLFHDDIKIEFP
YHARIPEDYIDLASMRIEFYQKIGNAESEEELEAIEEELRDRFGPSPEAISWLFALARIR
LIAQEYHLSSIKGTGNALYIQQYHDKDKQIQKTLPYSLSPTPELLVKEVQESVEKAFPK
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgacccaactagcatagatttttctagttttcctttattaaaagacacgaag
ctcccgtccttagtggaaaatctccactcgggagcaaggtcttttgtcatagcaaaacta
ttcaaagaacttaaacgctctatcgtcgttatcacgacactggcaaaacttgatgattta
ttcgaagatttgaccactctattggcagaatcgcctcttgagttccctgcttcagaaata
gatttatcccccaagctggtgaatgttgatgcggtgggaaaaagagaccatattctgtat
tctctgcaaaaacagagtgctccagttatctgtgtcacaacactgaaggctttatcagaa
agaactccttctccagaatctatgatccgagatcatctcgaacttcgagtaggagaagaa
ctggatcccgataccctactcgatctttgtaaaagtttaggttatcgacatgaagctcta
gctagggaaaaaggagactttgcattccgaggagggattgttgatattttccccctatct
tctccagaaccttttcgcattgaattctggggggatcgcgtttcctctattcgctcttac
aacccttcggatcaactctctacaggaaagctgtctcaaattaccatttctcctgcgacg
gcaatcattcctacaaacaaattatctcattcacttttggattattttaaagcgttcccg
ctttgtatctttgatgggctctcgtctcttgaagataatttttcggatattgcaggcatc
ttagcatctcttccgaaacgttttatgcccattcaggatctatgtcagcggattctcaaa
gaatttactcctctattttttgaagaaaaaacgttccccaacctcatttcgcataaggat
acaggattttctatagaggcttttcataagaagatctctgtacaaagagtttctttacct
tttatctatcctccggcactaatagaaactagtggcgagcaaaaccctttacttgcattt
ttaaagaccttccaggatttttgtgctgggcgtacgctctctttagctttgtattgttcc
aatacaaaatccttaaaagaagctcatgatctcgcagcagcctgtatcccaaacactcaa
atttacgaccatcctacaactctctcctccagttttgcgttagtagaagctggatttgct
gccgtttccctttcggaatttgcagcgagcaaagtcctccgtagacaaaaacaacggaac
tatttttctactacaacggaagaagtgtatattccagtcccaggagagactgtagtccat
ttacacaatggaattggaaaattcattggtatagagaaaaagcctaatcatctcaatatt
gaaacagattatctagttttagagtatgcagacaaagctcgcctctatgtcccttcagac
caagcttatctaatctcacgctatgttggtgcttcagaaaaagctcctgatttgcatcac
ttgaatggagcaaagtggcgacgatctcgggagctctcagaaaagtctgtgattttgtat
gcagaaaagctgattcaaatggaagctcagcgttctacagcgaattcttttatctatccc
ccgcacggagaagaggtaatcaaatttgccgaaagtttcccgtatgaagaaacgccagat
cagcttaaagctatcgatcagatttatgcagatatgatgtctgataaattaatggatcgg
ctgatttgtggagatgcagggttcgggaaaacagaaatcattatgcgggcagccgtaaaa
gctgtgtgtgatgggcacaagcaagtaatcgttatggtccctaccacgatcttagcgaac
cagcattttgaaactttttcccaacggatggctgggctgcctatcacaattggactattg
tcccgcttttctcaagggaaaacgatgaaaaaaacattagaggatatagcccaaggacgt
attgacattctcattggcactcataaagtcattaacaaagccatagaatttcataatcca
ggtctacttattattgatgaagaacaacgctttggagtgaaggccaaagattctctaaaa
gaacgcttccccacaatcgattgtcttactgtttctgcaactccaattccaagaactctg
tatctctctttatctggagctcgagacctttctctcattacaatgcctcctttagatcga
cttcccgtcagtacatttgtcatggagcattctgaagaaaccctatctgcagcaatacgc
catgagcttttacgtggagggcaggtttacgttattcacaatcgcatcgaaagtattttc
cgtttaggagaaaccattcgaacattgattccggaagcacgtattggcgtagctcatgga
cagatgcatgccaatgaactagcaagtatattttataaatttaaaactcaacaaaccaat
gtgcttgtcgcaacggctttaattgaaaatggtatcgacattcctaatgcaaatacgatc
ttgatagaccacgcagataaattcggtatggctgatttgtatcaaatgaaaggccgtgtt
ggacgatggaataagaaagcttattgttattttcttgtccctcatttggatcgcttatcc
ggacctacttctaaacgcctagaagcattgaataaacaggagtacggtggcgggatgaaa
atagctcttcatgatttggaaatccgaggagctggaaatattttaggtaccgaccaatcc
gggcatattagtgctgttgggtttaacctatattgcaaattactgaaaaaagctgtggct
gccctgaagcataaacaaaaacccatgctcttccacgatgatataaaaattgagtttcct
tatcatgcgcgcatccctgaagactatatagatcttgcttctatgcgcatcgagttctat
caaaaaattggaaatgccgaatctgaagaggagctagaggctatagaagaagagctgcgg
gataggtttggaccttctccagaagctatttcctggttatttgctctagcgcggattcgg
ttaatcgcgcaggaatatcacctttccagtatcaaaggaacagggaatgcattatatatc
cagcagtatcatgataaagacaaacaaattcaaaaaacgttaccgtattctttatcaccg
acaccggaacttttagtaaaagaagtccaagagtctgtagaaaaggctttcccaaaataa
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