Chloroherpeton thalassium: Ctha_0063
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Entry
Ctha_0063 CDS
T00726
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cts
Chloroherpeton thalassium
Pathway
cts03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ctha_0063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cts03400
]
Ctha_0063
Enzymes [BR:
cts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ctha_0063
DNA repair and recombination proteins [BR:
cts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ctha_0063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_30
BAHCC1-like_Tudor
Motif
Other DBs
NCBI-ProteinID:
ACF12534
UniProt:
B3QSE3
LinkDB
All DBs
Position
73622..76954
Genome browser
AA seq
1110 aa
AA seq
DB search
MKNTDAAQEAVSVEIEGFSLPSFRQRISESATTRLLVQKCEENAPSVSAQGVYGSLAAIL
TALMFETLRRPVLLVCNEERVDLFENDLRQLASAKDVCDFVSEPSLTLATLVADPQKITV
ASTLELQKKVLPKKEALEKQVRLSENEPFGYETLIRFLQENGFDQKDFVESEGDFSVRGS
VVDVFSFGAASPVRIEFFGDEPESIRFFDINSQLSKENISSVSIVSNLVAAEDAESECVS
LLDYLPANTLVVLDGYDTLRFEDSDAGVLEESEIRADLETFQQVRFHLLSPAEIDFASAV
IPKFNSNFAHFSQHVRQAVANEYDILVATKSKKELQELVEFISVAPFEAFESDSQNAPAP
EEIILRSLHQNLYEGFQFENTVLYTESDVFGKLHSHKQHRRRKHRKISLRELRALKVGDY
IVHEDYGIGVFMGMEKTKVGGSEQECVLVEYDKGDKLFVNIQNLHLLSKYSSAEGKVPTL
SKLGSNKWQANKEKIKKRLKDIARNLIAIYAKRKMTKGFACKQDSVWQREFEAAFIFDET
PDQMSAIESIKADMEAVAPMDRLICGDAGFGKTEVAMRAAFKAVESGKQVAVLVPTTILA
HQHFNTFKLRFQNFPMRVEVLSRFVPKKSQKAVIAEIGEGKVDIVVGTHRIVSKDVKFTD
LGLLIIDEEQHFGVAAKEKLREDFPSVDTLVLSATPIPRTLQFSMMGARDLSIISTPPKN
RQPVETVIHEFDAEMIKQAIGREIGRGGQVFFLHNRINSISEMYELVKKLFPRARVGVAH
GQMPTKELEAVMLDFIQKELDVLVSTAIVGSGLDISNANTMIINRADMFGLSDLYQLRGR
VGRSDKKAYAYLFTPPLSTLKQDALQRLAVIEAYTELGSGFSVAMRDLDIRGAGNLLGAE
QSGFIFDLGFDVYQKILEEAVSELKSTEFQNIFAESERLKLQPKKPCEVIFFFDALIPAY
YVESASERFALYEKLSKANTYEALGKLAAELNDRFGKMPEECQSLFDVGVLRILGTELEL
QRLEISETKTAVFLPEGENKAFYEGKKFEVILASVQSDWLAKFNPQFSNEKKLKIILSFA
ENMKKRPQKALNEIIDVMKKMKALVEEQEG
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatacggatgccgcccaagaggccgtttcagttgagatagagggtttttcgttg
ccgagctttcggcagcgcatttcggagtccgcgacgacgcggctcttggttcaaaaatgt
gaggagaacgcgccgagcgtttcggcgcagggcgtctacgggtcgctggctgcgattttg
accgcgctgatgttcgagacgcttcgccgtccggtgttgctggtttgcaacgaggagcgc
gttgatttgtttgaaaacgatttgcgccaactcgcgagcgcaaaggacgtttgcgatttc
gtctccgagccgtcgcttacgctggccacgcttgtcgccgacccgcaaaaaatcacggtc
gcctccacgcttgaacttcaaaaaaaggtattgcccaaaaaagaagcgttggaaaaacag
gttcggctgtccgaaaacgagccgttcggctacgagacgctcattcggtttttgcaagaa
aacgggtttgaccaaaaagattttgtcgaaagcgaaggcgatttttcggtgcgcggatcg
gtggtggatgtgttttcgttcggcgcggcctcgcccgttcgcatcgagttttttggcgac
gagccggaatccatccgcttttttgatattaattcgcagctttccaaagaaaatatttcg
tccgtttccatcgtctcgaatttggttgctgccgaagatgccgaatcggaatgcgtttcc
ctgctggattatttgcccgcaaacacgctcgtcgttttggacggctacgacacgcttcgc
tttgaggacagcgacgccggcgttttggaggaatcggaaattcgcgccgatttggagact
tttcaacaagtccgttttcatctgttaagtccggcggagatcgattttgcttcggcggtg
attcccaaattcaattccaattttgcgcatttttcgcagcatgtccgccaagcggtggca
aatgaatatgacattttggtggcgacgaagtccaaaaaagagcttcaggaacttgttgaa
tttatttccgtcgcgccgtttgaagcgtttgaatcggactcgcaaaacgcgcccgcgcca
gaggaaatcattcttcgttcccttcatcaaaatctttatgagggatttcagtttgaaaac
accgtgctttataccgagtcggatgttttcggaaagttgcattcgcacaagcagcatcgg
cggcgcaagcatcgcaagatttcgctgcgtgaattgcgggcgctgaaggtcggcgactac
atcgtccatgaggattacggcatcggcgtgtttatgggcatggagaaaaccaaagtcggc
ggctcggagcaagaatgcgtgctggtggagtacgacaagggcgacaagctttttgtcaat
attcaaaatctgcatttgctttcgaaatattcgtcggcggaaggtaaagtcccgacgctc
tccaagctcggcagcaacaagtggcaggcgaacaaggagaaaatcaagaagcgcctcaag
gacatcgcccgcaacctgattgcgatttacgccaaacgaaaaatgacgaagggctttgcc
tgcaagcaagattcggtgtggcagcgcgagtttgaggccgcgtttatttttgacgaaacg
cccgaccaaatgtccgccatcgagtccatcaaagccgacatggaagccgttgcgccgatg
gacaggctcatttgcggcgatgccggtttcggcaaaaccgaagtggcgatgcgagcggcg
ttcaaggcggtcgagtccggcaagcaggtcgccgtgcttgtgccgacgacgattttggcg
caccagcatttcaacacgttcaagctgcgttttcaaaatttcccgatgcgcgttgaggtc
ttgagccgtttcgtgccgaaaaaatcgcaaaaagcggtgattgcggaaattggtgaaggg
aaagtggacatcgtggtcgggacgcatcggattgtttcgaaggatgtaaaatttaccgat
ttgggcttgctcatcatcgatgaggaacagcatttcggcgtggcggcaaaggaaaaattg
cgcgaggatttcccgtcggtcgacacgctcgtgctttcggcgacgccgattccgcgcacg
ctgcaattttccatgatgggcgcacgcgacctttccatcatctccacgccgccgaaaaat
cgccagcccgttgagaccgtcattcacgagttcgatgcggaaatgattaagcaggcgatc
ggcagagaaatcgggcgcggcgggcaggtgttctttttgcacaatcgaattaattcgatt
tcggagatgtatgagttggtgaaaaagctctttccgcgagcgcgggtcggcgtggcgcac
gggcaaatgccgacgaaggaattggaagcggtgatgctggattttattcaaaaggaattg
gatgtgctggtctcgaccgcgattgtcggctcgggcttggacatttcgaacgcgaacacg
atgatcatcaaccgcgccgatatgttcgggctgtcggatttgtatcagcttcgcgggcgc
gtaggtcggtcggacaaaaaagcttatgcgtaccttttcacgccgccgctttccacgctg
aagcaagacgccttgcagcgcctcgccgtcattgaggcctatacggaactcggctcgggc
ttcagcgtcgccatgcgcgatttggacattcgcggcgcgggcaatttgctcggcgcggag
caatcgggcttcatcttcgatttgggatttgatgtctatcagaaaattttggaggaagcg
gtttcggaactcaaatccaccgagttccaaaatattttcgccgaatccgaacgcttgaag
cttcaaccgaaaaagccgtgcgaggtgatttttttcttcgacgcgctgattccggcttat
tatgtagagtcggcgtcggagcgttttgcgctctatgaaaagctctccaaagcgaacact
tacgaggcactcggcaaactcgccgccgagctaaacgaccgtttcggcaagatgcccgaa
gagtgtcaaagcctgtttgatgtcggcgttctgcgaattttaggcacggaattggaactg
caacggcttgaaatttcggaaacgaaaactgccgtatttttgccggaaggcgaaaacaaa
gccttttacgagggcaaaaagttcgaggtgattttggcgtcggtgcaatccgattggctc
gccaaattcaacccgcaattcagcaatgagaaaaagctgaaaattattctttcgtttgcc
gagaacatgaaaaaacgcccgcaaaaagcgctgaacgagatcattgatgtgatgaaaaaa
atgaaagcgttggtggaagagcaagaaggataa
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