Chloroherpeton thalassium: Ctha_0310
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Entry
Ctha_0310 CDS
T00726
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cts
Chloroherpeton thalassium
Pathway
cts03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cts00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ctha_0310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cts03019
]
Ctha_0310
Enzymes [BR:
cts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ctha_0310
Messenger RNA biogenesis [BR:
cts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ctha_0310
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
UvrD-helicase
Cas3-like_C_2
CHASE8
Motif
Other DBs
NCBI-ProteinID:
ACF12781
UniProt:
B3QTY3
LinkDB
All DBs
Position
352581..353876
Genome browser
AA seq
431 aa
AA seq
DB search
MSLINFESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFAL
PILHRLGENRSYDIRAPRALILTPTRELALQIDNNIRLYARYLRLRTGVIMGGVPAHPQI
KMLRRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPR
DHQTLLFSATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKRELLHNL
FKENDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVL
VATDIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRMLKG
IEKLTKSSIAICDNNPFHSIAVASMHKVAKAGNKPQYFQKKPRRFSNSKSKYSSKYSDRK
HSSGKRSYKSA
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcattaattttgaaagtatttcactcaatccctccattcttcgcgcgttaaaa
gagttaggctacgaaacaccaaccgccattcaagccgctgctatcccggaagctatttta
ggaaaagatatccttgcaaccgcacaaactggaacaggtaaaaccgctgcattcgcactc
ccgattcttcaccgtttaggcgaaaatcgcagttatgacattcgcgcaccacgagccctt
attctaacgccaacccgagaattggcacttcaaattgacaacaatatccgcctttatgcg
cgttacttacggctgcggactggtgtcattatgggcggtgtgccagctcatcctcagatc
aaaatgcttcgtaggaatcctgacattttggtggcaacgccaggacgcctcatcgacttg
tttgaccaaggctttatcgggcttgatcaaatccaaaccttcgttttggatgaagcagat
cgcatgctcgacatgggattcatcgacgacattcgccgcatagaatccttgcagccgcgc
gatcaccaaacgctgctattttccgcgacactttcaccggaaattgaagcgttggcctcg
cggatgcttcgcgagcccgtccgcattgaagtcgcaccggtttcttccgttgccgacaac
atcacgcagaaagtgcttttcgttgaacaaaacaacaagcgcgagttgcttcacaacctt
ttcaaggaaaacgacatcaagcgcgcgctggtctttaccagaaccaaacaacgcgccaat
catgtggccgagcagctcattcgtttgggcatttctgccgacgcgattcactcaagcaaa
agccaacgcgctcgtcagcgtgcgctcatgctttttgatcgtggcaaaattaatgtgctc
gttgcaaccgacattgccgctcgcggcatcgatgtggatggcatttctcatgtgattaac
tacgaattgccagacgatcctgaaaactacgtgcaccgcattggacgcaccgctcgtgca
ggcgcttccggcacggcgctttccttctgcgacgcagacgaagttagaatgctcaaaggc
attgaaaaattgaccaaaagctcaattgcgatttgcgacaacaatccatttcactccatt
gctgtggcgtccatgcacaaagtggccaaagcgggcaataaaccgcaatattttcagaaa
aagccacgccggtttagcaattccaagtcaaaatactcaagcaaatattccgatagaaaa
cactcttcgggaaaacgctcctataaatcagcttga
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