Chloroherpeton thalassium: Ctha_0855
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Entry
Ctha_0855 CDS
T00726
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cts
Chloroherpeton thalassium
Pathway
cts03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cts00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ctha_0855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cts03019
]
Ctha_0855
03400 DNA repair and recombination proteins [BR:
cts03400
]
Ctha_0855
Enzymes [BR:
cts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ctha_0855
Messenger RNA biogenesis [BR:
cts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ctha_0855
DNA repair and recombination proteins [BR:
cts03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ctha_0855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
CENP-P
Motif
Other DBs
NCBI-ProteinID:
ACF13323
UniProt:
B3QWV9
LinkDB
All DBs
Position
complement(1022103..1023887)
Genome browser
AA seq
594 aa
AA seq
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MSVRPKVDKLEKSDELLLGKAEAILQKTFGYPHFREGQDRVILSLLKGQDSLVVMPTGQG
KSLCYQIPALMQEGLTLVVSPLIALMKDQTDSLRARNYPARALNSQTPQAEIQAIFSGIY
QNRLKLLFIAPERLQNEGFLSDMRQAKISLVAVDEAHCISEWGYDFRPSYQQIASQLKLI
YPKTRPVMLALTATATEEILKDIAKSLALKNPFIYIGGFERASLSLSVFQLENKREKVLQ
ILKAVPGAAIIYTMSRKLAEELSVFLKRSGISALCYHAGLGDAVRSRIQDDFFRNRCRVI
CATNAFGMGINKADVRAVIHLNIPETLEAYFQEAGRAGRDGRRSYATLLYSPADIERRRY
LFENAHPDKKEVAACYEAIFQKCFKTGREVVRFEQESLCGEISKRTGEKILLYKLGTILG
VLERHQILSHLKSDEENESLEVFLDRHDMQQWVFRQDDELEVLVFEQILRTFGETCFRRK
MPFQLARFCEKGMLDEKEVLRVFRGWQAARLIDFQTKNTLLIKLLCTDGKPENLPIDWKV
MEKRRKIAERKLAQMLQYVQYEKCRRNFILDYFGETRYTETCGICDNCTGRHAR
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttcgcccaaaagttgataagttagagaaatccgatgaattgctgctcggaaaa
gcggaagccattttgcaaaaaacgttcggctatccgcattttcgcgaaggccaagatcga
gtgattttaagtttgctaaaaggtcaagactcgcttgtcgtgatgccgacgggtcaggga
aaatcgctttgctatcaaattcctgcgctcatgcaagagggactcacgctcgtggtttcg
cccttgattgcgctgatgaaagaccaaacggattcacttcgcgcgcgaaattatccggcg
cgggcgctcaatagccaaacacctcaggctgaaatccaagcgattttttcagggatttat
caaaatcggctgaagctgctgttcattgcgccggagcgactccaaaacgagggatttctt
tccgacatgcgccaagccaaaattagcctcgtagccgtcgacgaagcgcattgcatttcc
gagtggggatacgatttcaggccgagctatcaacaaattgcgtcgcagttaaaattaatc
tatccaaagacgcgaccagtgatgcttgcgctcacggccacagcgacggaagaaatcctg
aaagacatcgcaaaatcgctcgcgctgaaaaatccctttatttatatcggcggattcgag
cgagcgtcgctcagcctttcggtttttcagcttgaaaacaaacgcgaaaaagtacttcaa
attttgaaggccgtgccgggtgctgcgattatctacaccatgtcgcgcaagcttgccgaa
gagctttccgtttttttgaaacgaagcggcatttccgcgctttgttaccatgccggactt
ggcgacgccgttcgcagccgcattcaggacgattttttccgaaatcgctgccgtgtgatt
tgcgcgacgaacgcttttggcatgggcatcaacaaagccgacgtgcgcgccgtgattcac
cttaacattcccgaaacgctcgaagcgtattttcaggaagccgggcgtgccggacgcgat
ggccgccgaagctacgccacgctgctctactcccccgccgacatcgaacgccgccgctac
ctttttgaaaatgcacaccctgacaaaaaagaagtcgccgcttgctacgaggcaattttt
caaaagtgcttcaaaaccgggcgcgaggtggtgcgtttcgagcaggaatcgctttgtggc
gagatttcaaaaagaacaggcgaaaagattttgctctataagctcgggacgattttgggc
gttttggagcggcatcaaattttgtcgcatttgaaaagcgacgaggaaaacgagtcgctg
gaagtatttctcgaccgccacgacatgcagcaatgggtttttcgtcaggacgatgagtta
gaagtgctggtgtttgaacaaattttgcgaacttttggcgaaacttgcttccggcgaaaa
atgccgtttcaactggcgcgattttgcgaaaaagggatgctggacgaaaaagaagtgctt
cgcgtatttcgcggatggcaggcagcccgactgattgattttcaaaccaaaaacacgctg
ctcattaaattgctttgcacagacggcaaaccggaaaatttgcccatcgattggaaagtc
atggaaaaacgccgcaaaattgccgagcgaaaattagcacagatgctccaatatgtgcaa
tacgaaaaatgccgacgcaatttcattttagattatttcggcgagacgcgctacacggaa
acctgtgggatttgcgacaactgcaccggacgccacgctcggtga
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