Chloroherpeton thalassium: Ctha_1519
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Entry
Ctha_1519 CDS
T00726
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cts
Chloroherpeton thalassium
Pathway
cts03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cts00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ctha_1519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cts03019
]
Ctha_1519
Messenger RNA biogenesis [BR:
cts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ctha_1519
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
KH_2
HDOD
Motif
Other DBs
NCBI-ProteinID:
ACF13978
UniProt:
B3QS33
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Position
1782917..1784491
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AA seq
524 aa
AA seq
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MEIAINFGLIIAASLFFLVVGFFIGRIFLERIGTTKILEAEERAIQIVQEAQRESQAEKE
LKVSEVNEEWKRKKREFEQEVSIKNNKFSQTQKQVRVKEDALNRRSEQLQKRERALDDQT
KELNQKLQFVQQRTDELNQLIAEQNQRLVSISGLNAEEAKAMLMDNMIQQAKEEAAETIR
AIHEEAEKTANKTAEKTTLLAIQRVSLDQATENAISVVHLQNDEMKGRIIGREGRNIKAF
ENATGVDIIVDDTPEVVILSCFDPVRRELAKLTLQKLLVDGIIHPAAIEKAFEEAEKELE
EIVLSTGEDTLASLEIPNLHPDLVKLIGKMKYRSSYGQNLLQHSKEVSMLAGLMAAELKL
DSKLAKRAGLLHDIGQMLDSPDSSHAISGMEFLSKYREHPIVLNSVGAHHGEVPKDNPIA
ELVDAANVISSSRPGARGAITPEGYIRRLESLEEIAKSFPGVSKTYALQAGREIRVIVDG
NKIEDAQADMLSHDIAEKIQNTVEYPGQIKISVVREKRSVAYAK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgctataaactttggtttgattattgctgccagtttgttctttctggtagtt
ggtttttttattgggcgtattttcttagagcgtattgggacaactaaaatcttggaagcc
gaagagcgcgccattcagattgtgcaagaagcacagcgcgaatctcaagccgaaaaggaa
ttgaaagtttcggaagtaaacgaagaatggaaacgaaaaaagcgtgagtttgaacaagaa
gtttctatcaaaaacaacaagttttcccaaacccaaaagcaagttcgagttaaagaagat
gcgctcaatcgccgttccgaacagcttcagaaaagagagcgcgctttggacgatcaaacc
aaagagctcaatcaaaaattgcaatttgtgcagcaacgcacggatgaactcaatcagctc
attgccgaacaaaaccagcgtctggttagcatcagcggtttgaatgcagaagaagccaaa
gcgatgttgatggataacatgattcagcaggcaaaggaagaagctgctgaaaccatccgc
gccatccacgaagaagctgagaaaacagccaataaaacagcggaaaaaacaaccttgctc
gccattcaacgcgtttcattagaccaggccacagaaaatgccatctcggttgtccatctt
caaaacgacgaaatgaaaggccgaattatcggtcgcgaaggccgaaatatcaaagcattt
gaaaatgccaccggagtcgatattatcgtggatgacacacccgaagttgtaattctctcg
tgttttgatcctgttcgcagagaacttgcaaaattgacgcttcagaaactcttagtcgat
ggtattattcatccagcagccattgagaaagcgtttgaagaagcagaaaaagagcttgag
gaaattgttctcagcacgggcgaagacacgttagcctcgctcgaaatcccaaatctgcac
cctgatctcgtaaagctcatcggcaaaatgaagtatcgctcaagctatgggcaaaatctt
cttcagcattccaaagaagtttccatgcttgcaggcctaatggccgctgaactcaaactc
gatagcaaacttgccaaacgcgccggtctgcttcacgacattgggcaaatgctcgattct
ccagattcgtcacatgccatttcaggaatggaatttctttcgaaatatcgtgagcatccg
attgtgctaaactcagttggcgcgcatcatggagaagtgccgaaggataatcctattgcc
gagcttgtcgacgcggccaacgtgatttccagttcacgcccaggcgcgcgtggtgcgatt
acgccagagggctacattcgccgcttggaaagccttgaagaaattgcaaaaagtttccct
ggggtttcaaaaacatatgcgctgcaagccggtcgtgaaattcgcgtgattgtggacggc
aacaaaatcgaagacgcacaagccgacatgctctcgcacgacattgccgaaaaaattcaa
aacacggtagaatatcctggccaaattaaaatttcagtggtgcgtgaaaagagaagcgtc
gcgtatgcgaagtaa
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