Chloroherpeton thalassium: Ctha_1975
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Entry
Ctha_1975 CDS
T00726
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cts
Chloroherpeton thalassium
Brite
KEGG Orthology (KO) [BR:
cts00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cts03016
]
Ctha_1975
Enzymes [BR:
cts01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Ctha_1975
Transfer RNA biogenesis [BR:
cts03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Ctha_1975
Prokaryotic type
tRNA splicing ligases
Ctha_1975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACF14429
UniProt:
B3QUS8
LinkDB
All DBs
Position
2352979..2354154
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AA seq
391 aa
AA seq
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MSYTKLSLQTAHPILSWANHEMSSEELTMLKNMANLPCVFHHVALMADAHLGKGSMIGSV
IASKNAVIPASVGVDIGCGMCARKTPFYASDLQGKEEAIRAKIESSIPLGFHSHKTALPE
AAEWDGWRAFKDLHPSVQKLRGKAMEQLGTLGSGNHFIEICLDTENAVWVMLHSGSRNIG
KELADAHITAAKSLFNAGDLPDKNLAYFTFGSPEFDRYWNDLLWAQRYAEKNRDLMMAQI
MKILADELGQAKPVQVLFSVNCHHNYAAKEWHFGEHVFVTRKGAVRAGASDYGIIPGSMG
SKSFIVKGKGNEASFASCSHGAGRKMSRAQAKKRFTTRDLERQTSGILCRKDSGILDEIP
EAYKDIETVMQNQSDLVEILAELHQIVCIKG
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatacgaaattgagcttgcaaacggcgcacccgattctctcgtgggcaaatcat
gagatgagcagcgaggagctaaccatgttgaaaaatatggctaatttgccgtgcgtgttt
catcacgttgcgttgatggccgacgcgcacttgggcaaaggatcgatgatcggttcggtg
attgcgtccaaaaacgccgtgattccggcgtcggtcggtgtcgacatcggctgcgggatg
tgcgcccgaaaaacgcctttttatgcaagtgatttgcaagggaaagaagaagccattcgc
gccaaaattgaatcgtcgattccgctcggctttcatagtcacaaaactgcgttgccggaa
gccgccgagtgggacggttggcgggcgttcaaggatttgcatccgagcgttcaaaaactt
cggggcaaagccatggagcagctcggcacgctcggcagcggaaatcatttcattgaaatt
tgcctcgataccgaaaatgccgtttgggtgatgcttcattccggttcgcgcaacatcggc
aaggaacttgccgacgcgcacatcacggcggcaaaatcgcttttcaacgccggcgatttg
cccgataaaaacctggcctatttcacctttggctcgcccgaatttgaccgttactggaac
gatttgctttgggcgcaacgctatgcggagaaaaatcgcgacttgatgatggcgcaaata
atgaaaatcttagcagacgaactcggtcaagcaaaaccggttcaagttttgttttcggtg
aattgccaccataattatgccgcgaaggaatggcatttcggcgagcatgttttcgtgacg
cgcaaaggcgcggtgcgcgcgggcgcttcggattacgggattattcctggctcgatgggc
agcaaatcgtttatcgtgaaaggaaaagggaatgaggcgagttttgcctcgtgcagtcac
ggggcgggacgaaaaatgtcgcgggcgcaagccaaaaaacgcttcacgacgcgcgacctc
gagcgccagacttccggcattttgtgccgaaaagacagcggcattttggacgaaattccc
gaagcctataaagacatcgagacggtcatgcaaaaccagagcgatttggtggaaattctg
gccgaacttcaccaaatcgtttgtattaagggctaa
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