Comamonas thiooxydans: CtCNB1_0154
Help
Entry
CtCNB1_0154 CDS
T01109
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ctt
Comamonas thiooxydans
Pathway
ctt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CtCNB1_0154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctt03019
]
CtCNB1_0154
03400 DNA repair and recombination proteins [BR:
ctt03400
]
CtCNB1_0154
Enzymes [BR:
ctt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CtCNB1_0154
Messenger RNA biogenesis [BR:
ctt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CtCNB1_0154
DNA repair and recombination proteins [BR:
ctt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CtCNB1_0154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACY30900
LinkDB
All DBs
Position
complement(173665..175575)
Genome browser
AA seq
636 aa
AA seq
DB search
MSSAQSILQAVFGYEQFRGPQQAIVSHVINGGDALVLMPTGGGKSLCYQVPAIARQQLGH
GVTIVVSPLIALMHDQVGALHEAGISAAYLNSTLSYDETQEVELRLQSGDITLLYAAPER
LNTPRFLGLLDDLHAQGKLSLFAIDEAHCVSQWGHDFRPEYRALSVLHQRYADVPRIALT
ATADALTRADIIERLQLEAAQHFISSFDRPNIRYKIAEKKDVSNQLLRFIEREHEGEAGV
IYCQSRKRVEELAQTLVQNGINALPYHAGLPQEMRQNHQDRFLREEGVVMCATIAFGMGI
NKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLPADAWMAYGLSDVVNQRRMIDESPAEEQ
FKQVMRGKLDALLGLAEATDCRRVRLLAYFGEQYGQEPSLDGKPLQAVARTHCGNCDNCL
EPPALWDGTDAARKLLSTIFRVHEASGLTYGAGHIMDVLRGKETDKVTQYGHDKVSTFGI
GKEYSEPQLRAVMRQLLATGALGLHKVVSENSGHVFDTLCLAAGSRAVLKGEVQVQLREA
VAASRSKKQGKKSAANAAAVNLGPDAQVRFINLKAWRAEVAKSHNLPAYVIFHDATLASI
AELNPQSLQELQGVSGMGTKKLDAYGAEVLRVVALG
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttccgcgcaatccattctgcaagccgtttttggctacgagcaattccgtggcccc
cagcaggccatcgtctcgcatgtcatcaacggcggcgatgcgctggtgctcatgcccacg
ggcggcggcaaatcgctgtgctaccaggttccggccattgcgcgccagcagctcggccat
ggcgtgacgatcgtggtctcgccgctgatcgcgctcatgcacgaccaggtcggggcgctg
catgaggccggcatcagcgccgcctatctgaactccaccctgagctacgacgagacgcag
gaggtggagctgcgcctgcaaagcggcgacatcaccctgctctatgccgctcccgagcgg
ctgaacacgccacgttttctgggtctgctcgacgatctgcatgcccagggcaagctgtcg
ctgttcgccatcgacgaagcgcattgcgtgagccagtgggggcacgacttccgccccgaa
taccgcgcgctgagcgtgctgcaccagcgctatgccgatgtgccgcgcatcgcgctgacg
gccacggccgatgcgttgacgcgcgccgacatcatcgagcgcctgcagctggaagcggcc
cagcatttcatcagcagtttcgaccgcccgaacatccgctacaagatcgccgagaaaaag
gacgtcagcaaccagctgctgcgctttatcgaacgcgagcacgagggcgaggccggcgtg
atctattgccagtcgcgcaagcgtgtcgaggagctggcccagaccctggtgcagaacggc
atcaatgccctgccttatcacgccggcctgccccaggaaatgcgccagaatcatcaggac
cgttttctgcgcgaagaaggcgtggtgatgtgcgccacgattgccttcggcatgggcatc
aacaagcccgatgtgcgctttgtggcccatgtggacatgcccaagaacatcgagggctac
taccaggaaaccggccgtgcgggccgcgacggcctgcccgccgatgcctggatggcctac
ggtctcagcgacgtggtcaaccagcgccgcatgatcgacgaaagcccggccgaagaacag
ttcaagcaggtgatgcgcggcaagctcgatgccctgctcggtctggccgaggccacggac
tgccgacgcgtacgcctgctggcctattttggcgagcagtatggacaggagccgagcctg
gatggcaagccactgcaggccgttgcccgcacccattgcggcaactgcgacaactgcctg
gaaccgccggcgctatgggatggcacggatgcggcacgcaagctgctgtccaccatcttc
cgcgtgcacgaggccagcggcctgacctatggtgcgggccacatcatggacgtgctgcgc
ggcaaggagacggacaaggtcacgcagtacgggcatgacaaggtatccaccttcggcatc
ggcaaggagtattcggagccacagctgcgcgccgtgatgcgccagttgctggccacgggg
gccctgggcctgcacaaggtggtgagcgagaatagcggccatgtgtttgacaccttgtgc
ctggccgcgggctcgcgtgccgtgctcaagggcgaagtacaggtgcagctgcgcgaggcc
gtggccgcatcgcgcagcaagaagcagggcaagaaatcggccgccaatgcagctgcggtc
aatctgggccccgatgcgcaggttcgcttcatcaatctcaaggcctggcgcgccgaagtg
gccaagtcgcacaatctgccggcctatgtgatcttccacgacgccacgctggcatcgatt
gccgaactcaatccccagagcctgcaagagctgcagggcgtcagcggcatgggcaccaag
aagctcgatgcctatggtgccgaggtgctgcgcgtggtggcactgggctga
DBGET
integrated database retrieval system
