Comamonas thiooxydans: CtCNB1_0359
Help
Entry
CtCNB1_0359 CDS
T01109
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ctt
Comamonas thiooxydans
Pathway
ctt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CtCNB1_0359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctt03021
]
CtCNB1_0359
03400 DNA repair and recombination proteins [BR:
ctt03400
]
CtCNB1_0359
Enzymes [BR:
ctt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CtCNB1_0359
Transcription machinery [BR:
ctt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CtCNB1_0359
DNA repair and recombination proteins [BR:
ctt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CtCNB1_0359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACY31105
UniProt:
A0A096FW19
LinkDB
All DBs
Position
388138..392361
Genome browser
AA seq
1407 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMTEDDYDAKQLEYGYDEFTAK
MGAEGIKDLLEGIDIDVEIERLRNDLTGSEVKVKKNAKRLKLLEAFKKSGIKPEWMVMEV
LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQE
AVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPYL
KLHQCGLPKLMALELFKPFIFAQLEQRGIATTIKAAKKEVEAGTPVVWDILEEVIKEHPI
MLNRAPTLHRLGIQAFEPILIEGKALQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEAR
VLMLASNNVLFPASGEPSIVPSQDVVLGLYHATREKINGKGEGMVFADLMELQRALDAGE
TELHAKISVRLTEWNKNKETGEFEPVTSLVETTVGRALLSEILPKGLAFSNMNKALKKKE
ISKLINASFRKCGLKATVVFADKLLQNGFRLSTHAGISISIDDMLVPPQKADILARAESE
VKEIEQQYVSGLVTSGERYNKVVDIWGKAGDDVSKVMMDQLKVQKTTDRHGNEVDQESFN
AIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVNEQDCGTSNGYLMRAIVEGGEVIESLRDRVL
GRSTAEEVLHPETRAVLVPAGTLLNEDTIEELEAQGVDEIKVRTALTCETRFGLCATCYG
RDLGRGGLINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGF
NSTMRYVSNTKGELVVISRSGEIVISENGRERERHKVPYGAVLTIKPDEAIKAGKILANW
DPLTRPIITEYAGQVRFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGSAKVVRPQVKLI
DANNQEVKIPGTDHAVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTVSFGKETKGKIRLQITDLEGKVWEELVPKERNILVHEGQ
VVNKGESIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVIIENSGDTTYIQGEQVERSEVLNTNEQMQKEGKLPATYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKDEMDDAERRA
IAEAEEAELAGVLADDVEAPAGDASAD
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaatttacgcctgatgagcatttcgatgccatc
aagatcggcctggcctcgcccgagaagatccgttcctggtctttcggcgaagtgaagaag
cctgaaacgatcaactaccgtactttcaagcccgagcgtgatggtctgttctgcgccaag
atctttggcccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtcacacagaccaaggtgcgtcgcgaa
cgcatgggccacatcgacctggccgcgccctgcgctcacatctggttcctgaagtccctg
ccttcgcgcctgggcctggtgctggacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctatgtggtgaccgaccccggcatgactccgctgaagaagttcagcatcatg
accgaggacgactacgacgccaagcaactcgagtacggctacgatgagttcaccgccaag
atgggcgctgaaggcatcaaggacctgctcgaaggcatcgacatcgacgtcgagatcgag
cgcctgcgcaacgatctgaccggctccgaagtcaaggtcaagaagaacgccaagcgcctg
aagctgctcgaagcgttcaagaagtccggcatcaagcccgagtggatggtgatggaagtg
ctgcctgtgctgcctcccgatctgcgtcctctggtgcctctggacggtggccgtttcgcc
acttccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgtctgcgtcgt
ctgctcgagctcaaggctcctgaaatcatcgcgcgcaacgaaaagcgcatgttgcaggaa
gccgtggactcgttgctggacaacggccgtcgcggcaaggccatgacgggcgccaacaag
cgtgccctgaagtctctggccgacatgatcaagggcaagagcggtcgtttccgtcagaac
ttgctgggcaagcgcgtggactactccggtcgttccgtgattaccgtgggtccttacctc
aagctgcaccagtgcggtctgcccaaactgatggcgctggagctgttcaagcccttcatc
ttcgcgcagctcgagcagcgcggcattgccacgaccatcaaggctgccaagaaggaagtg
gaagccggtacgcccgtggtgtgggacatccttgaagaagtcatcaaggaacaccccatc
atgctcaaccgtgcgcctacgctgcaccgtctgggtatccaggctttcgagcccatcctg
atcgaaggcaaggccctgcaactgcacccgctggtctgcgcggccttcaacgccgacttc
gacggtgaccagatggctgttcacgtgcctctgtctgtggaagcgcagatggaagcccgc
gtgctgatgctggcctcgaacaacgtgctgttccccgcttcgggcgaaccctccatcgtt
ccttcccaggacgtggtgctgggtctgtatcacgccacgcgtgaaaagatcaacggcaag
ggcgaaggcatggtgtttgccgacctgatggagctgcaacgcgctctggatgccggcgag
accgagctgcacgccaagatcagcgtgcgcctgaccgagtggaacaagaacaaggaaacc
ggcgaattcgagcccgtgacctcgctcgtggaaaccaccgtgggccgtgccctgctgtct
gaaatcctgcccaagggcctggctttcagcaacatgaacaaggcgctgaagaagaaggaa
atctccaagctgatcaacgcctccttccgcaagtgcggtctgaaggccacggtcgtgttt
gccgacaagctgctgcaaaacggtttccgtctgtccacgcacgccggtatctcgatctcc
atcgacgacatgctggtgcctccgcaaaaggccgacatcctggcccgcgcagagtccgaa
gtgaaggaaatcgagcagcagtacgtctcgggtctggtgacctccggcgaacgctacaac
aaggtggtggacatctggggcaaggccggcgacgacgtgtccaaggtgatgatggaccag
ctcaaggtccagaagaccaccgaccgtcacggcaacgaagtcgatcaggaatcgttcaat
gcgatttacatgatggccgactccggcgcccgtggctccgcagcgcagattcgtcagctg
gccggtatgcgtggtctgatggccaagcctgacggctccatcattgagacgcctatcacc
gcgaacttccgcgaaggcctcaacgtgctgcagtacttcatctcgacccacggtgcccgt
aagggtctggccgatacggcgctgaagacggctaactccggttacctgactcgtcgtctg
gtggacgtgacgcaggatctggtcgtgaacgaacaggattgcggtacctccaacggctat
ctgatgcgcgccatcgtcgaaggcggtgaagtgatcgaatccctgcgcgaccgcgtgctg
ggccgttcgaccgccgaagaagtgctgcaccccgaaacccgtgccgtgctggtgcctgcc
ggcaccctgctcaacgaagacaccatcgaagagctggaagcccagggcgtggacgaaatc
aaggtgcgtacggctctgacctgcgaaacccgtttcggcctgtgtgccacctgctacggt
cgcgacctgggccgcggcggcctgatcaacctcggcgaagccgtgggtgtgatcgctgcc
cagtccatcggcgaacccggcacgcagctgaccatgcgtaccttccacatcggtggtgcc
gcttcgcgtgccgccatcgcctcgagcgtggaagccaagtccaatggtgtcatcggcttc
aacagcacgatgcgctatgtgtccaacaccaagggcgagctggtggtgatttcgcgttcc
ggcgagatcgtgatcagcgaaaacggccgcgagcgcgagcgtcacaaggtgccttacggc
gccgtgctgaccatcaagcccgatgaagccatcaaggccggcaagatcctggcgaactgg
gacccgctgacccgacccatcattaccgaatacgccggtcaagtgcgtttcgagaatgtg
gaagaaggtctgacggtggccaagcaggtcgacgaagtgaccggtctgtccactctggtg
gtgatcgaccccaagcgtcgtggctctgccaaggtggtgcgtccccaggtcaagctgatt
gacgccaacaaccaggaagtcaagatccctggtaccgaccatgccgtgacgatcggcttc
caggtcggcgccctgattcaggtgcgcgacggccaggacgtgggccccggcgaagtgctg
gcccgtatccctgtggaaggccagaagacccgcgacattaccggtggtctgccccgtgtg
gccgaactgttcgaagcccgtacgcccaaggacaagggcactctggccgagatgaccggt
accgtgtccttcggcaaggaaaccaagggcaagatccgcctgcagatcaccgatctggaa
ggcaaggtctgggaagaactggtgcccaaggagcgcaacattctggtccacgaaggccag
gtggtgaacaagggcgagtccatcgttgacggtcctgccgatcctcaagacatcctgcgt
ctgctgggtatcgaagagctgtcgcgctacatcgtggacgaggtgcaggacgtttaccgc
ctgcagggtgtgaagatcaacgacaagcacatcgaagtgatcgtgcgtcagatgctgcgt
cgcgtgatcatcgagaactccggcgataccacctacatccagggtgaacaggtcgagcgt
tccgaggtgctcaacaccaacgaacagatgcagaaggaaggcaagctgcctgccacgtac
tccaacgtgctgctgggcatcaccaaggcttcgctgtcgaccgactcgttcatctctgcg
gcttccttccaggaaaccacccgtgttctgaccgaagctgccatcatgggcaagcgcgac
gagctgcgtggcctgaaggaaaacgtgatcgtgggtcgtctgatccccgccggtaccggt
ctggcctatcaccaggctcgcaaggccaaggacgaaatggacgatgccgagcgtcgtgcc
atcgccgaagccgaagaagccgagctggccggtgtgctggctgatgacgtcgaagcacct
gctggcgacgcctctgccgactaa
DBGET
integrated database retrieval system
