Comamonas thiooxydans: CtCNB1_0839
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Entry
CtCNB1_0839 CDS
T01109
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ctt
Comamonas thiooxydans
Pathway
ctt03410
Base excision repair
ctt03430
Mismatch repair
ctt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ctt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CtCNB1_0839
03430 Mismatch repair
CtCNB1_0839
03440 Homologous recombination
CtCNB1_0839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctt03400
]
CtCNB1_0839
DNA repair and recombination proteins [BR:
ctt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CtCNB1_0839
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CtCNB1_0839
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CtCNB1_0839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ACY31585
LinkDB
All DBs
Position
complement(942177..943916)
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AA seq
579 aa
AA seq
DB search
MKIIPRSIPDGSVSALLQAKIHPLLAQLYAARGVCSADELDDAPARLLPPSGLRGIDTAV
QLLADAITAQKRLCIVADYDCDGATACAVGLRGLRMLGAAHADYLVPDRVVDGYGLTAPI
SRRVKETGADMLITVDNGIASVEGVAVAKELGMSVVVTDHHLPGDHLPLADAIVNPNQPG
CEFASKSMAGVGVMFYVLLALRTELRNRGRFDRHNQPRLEQLLPLVALGTVADVVKLDAN
NRRLVALGLKQIRKGVMQPGIRALFEASGRRFDMATTIDFGFALGPRINAAGRLADMTIG
IECLSTEDVSRADNLARMLDSINRERREIEVSMREHALLMAEGLCEDGMTPPPAISVFDP
DFHEGVVGVVASRIKDKLHRPTFVFAASGAPGKEHELKGSGRSIPGFHLRDALDLVSKRH
PGLILRFGGHAMAAGCTIAEAHFDEFEKAFAQVAREWLDAATLTRRLETDGPLSPQWLDT
GLIEQMQLAVWGQGFAAPTFSEELEITSQRLVGEKHLKLELLHHGSKIDGIWFNHTDPLP
ARTTLAYRLDINEWRGERKVQFLVEAAQDFEGGAGNMGF
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataatccccaggtccattcccgacggcagtgtctctgcactgctgcaggccaag
attcatcccttgctggcccagctctatgcagcgcgaggcgtctgctcggccgacgagctc
gacgatgccccggcgcgcctgctgccgccctcgggcctgcgcggcatcgatactgccgtg
cagctcctggccgatgccatcaccgcgcaaaagcgcctgtgcatcgtcgccgactatgac
tgcgatggcgccacggcctgcgccgtgggcctgcgcggcctgcgcatgctgggcgcggcc
catgccgactatctggtgcccgaccgcgtggtcgacggctatggcctgacggcccccatc
tcgcgccgagtcaaggagaccggtgccgacatgctgatcaccgtggacaacggcattgcc
agcgtcgaaggcgtggccgtggccaaggagctgggcatgtcggtcgtggtgaccgaccac
catctgcccggcgaccacctgccgctggccgatgccatcgtcaaccccaaccagcccggc
tgcgagttcgctagcaaatccatggccggcgtgggagtcatgttctatgtgctgctggcc
ctgcgcaccgagctgcgcaatcgcggccgctttgaccgccacaaccagccccgtctcgag
caattgctgcccctggtagcactgggcacggtggccgacgtggtcaagctcgatgccaac
aaccgccgcctggtggcactgggtctcaagcagattcgcaaaggcgtcatgcagcccggc
atacgcgcgctgttcgaggcatcgggccgccgcttcgacatggccaccaccatcgacttc
ggctttgccctgggcccgcgcatcaatgccgccggtcgtctggcagacatgaccataggc
atcgagtgcctgagcacggaagatgtcagccgcgccgacaatctggcacgcatgctggac
agcatcaaccgcgagcgccgcgagatcgaagtcagcatgcgcgagcatgccctgctcatg
gccgaaggcctttgcgaggacggcatgacgccgccgcctgccatcagcgtgttcgacccc
gactttcacgagggcgtggtcggtgtggtggcctcgcgcatcaaggacaagctgcaccgg
cccacgtttgtgtttgcagccagcggcgccccgggcaaggaacacgagctcaagggctcg
ggccgctccattccaggctttcatctgcgcgatgcgctggatctggtcagcaagcgccac
cccggtctgatactgcgttttggcggccacgccatggcggcaggctgcaccatcgcagaa
gcgcactttgacgagttcgaaaaggcttttgcccaggtcgccagggaatggctggatgcc
gcaacgctgacgcgcaggctggagaccgatggcccgctgtcgccccaatggctggacacc
ggcctgatcgaacaaatgcagctggccgtctggggccagggctttgccgcgccgactttc
agcgaagagctggaaatcacctcgcagcgcctggtcggcgaaaagcacctgaagctggag
ctgctgcaccatggctccaagatcgacggcatctggttcaaccacaccgacccactgccc
gcgcgcaccaccctggcctatcgcctggacatcaacgaatggcgcggcgaacgcaaggtg
cagtttctcgtggaagccgcgcaggacttcgagggtggtgccggcaacatgggcttctga
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