Comamonas thiooxydans: CtCNB1_0960
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Entry
CtCNB1_0960 CDS
T01109
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ctt
Comamonas thiooxydans
Pathway
ctt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CtCNB1_0960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctt03019
]
CtCNB1_0960
03009 Ribosome biogenesis [BR:
ctt03009
]
CtCNB1_0960
Enzymes [BR:
ctt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CtCNB1_0960
Messenger RNA biogenesis [BR:
ctt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CtCNB1_0960
Ribosome biogenesis [BR:
ctt03009
]
Prokaryotic type
rRNA processing factors
CtCNB1_0960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
ACY31706
LinkDB
All DBs
Position
complement(1085720..1088656)
Genome browser
AA seq
978 aa
AA seq
DB search
MLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGED
RHGFLPFKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFISLAG
RYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDL
NYLLKLWSAIDGAAKASKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFM
AHVMPEHAARVKRYRDDAPLFSRFQIEHQIESAYSRTVTLPSGGAIVIDHTEALVSVDVN
SARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEEAKNRREVENRLRD
ALRQDRARVQFGTISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDTESSALQILR
IIQEESMKDNTAAVHCQVPVEVASFLLNEKRSEITKIELKQRVNVIMVPNKSMDTPHYKL
ERLKHDDSRLESMEASYKLADEPEEVTTVTRRSQEPTNKQTPVIKGVLPDAPAPIAEPRP
PRQPRAAAATPAPAAARPVVREQGFFAWLKNLFGFGAPAPVAAPAPVAAPAPAAREGSRD
GRRSEGRGGDRNRRGGDRNERSDRNSAERNGSERGDRNNRRNAQGRDEQQRNERPEQQQR
QDRPERGNRRGGERNERRDERQPQVAEAALNGEEFNAAPKPERNRQERGERTERNERGEG
RRERQNRNADAQPAMQAVADEAVLNTAQVDAADAQAQDGAQGDPAREPRQRRSRDRYGRD
RRDRAPRDAQAEGQAAEQAAEAQAPVEVPAADAGEQPARRSYFDAVAPQAQAEQAPVAAE
VQAPVVTEEAVVAVAPAAEPVQPVQAEPAAAAVEPVAETVAPAPAVATPKAQSYALPIAE
LQALAAASGLEWINSDAEKIAAVQAAIAAEPKPVRIPRERPPVVVLDEGPLILVETRKDL
SLMQLPFEKEEQAAGVNA
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcgacgcagtctgaagaacgccgcctggccattgtggacggccagaag
ctgctggactacgagatcgagatcgaaggtcgcgaacaacgcaagggcaatatctacaag
gccgtcgtgacccgcgtcgagccatctcttgaagcctgctttgtggactatggcgaagac
cgccacggctttctgcccttcaaggaaatctccaagcaatactttgccgaaggcgtttcg
cccagccaggcccgcatcaacgacgtgatccgcgagggtcaggagctgatcgtccaggtc
gaaaaggaagagcgcggcaacaagggcgcagccctgaccaccttcatctcgctggccggc
cgctatgtcgtgctgatgcccaacaacccccgtggcggtggtgtttcgcgccgcatcgag
ggcgaggaccgcgccgagctcaaggaggccatggaccagctcgagtaccccaagggcatg
tccatcattgcgcgcactgccggcatcggccgctcggcccccgagctgcagtgggacctg
aactacctgctcaagctgtggagcgccatcgacggcgccgccaaggcctccaagggcgcc
ttcctgatctatcaggaatccagcctggtgatccgcgccatccgcgactatttcaacaat
gacatcggcgacatcctgatcgacaccgatgacatctacgaacaggcccagcagttcatg
gcacatgtgatgcccgagcatgctgcccgcgtcaagcgctaccgcgacgacgcgcccctg
ttctctcgcttccagatcgagcaccagatcgagtccgcctattcgcgcaccgtgaccctg
ccctcgggcggtgccatcgtgatcgaccacaccgaagccctggtctccgtggacgtgaac
tcggcccgcgccatcaagggcggcgatatcgaggaaaccgcgacccgcaccaacctcgag
gcagccgacgaagtggcgcgccagatgcgcctgcgcgacctgggcggcctgatcgtgatc
gacttcatcgacatggaagaggccaagaaccgccgcgaagtggaaaaccgcctgcgcgat
gccctgcgccaggaccgcgcccgcgtgcagttcggcaccatcagcaagttcggcctgatg
gaaatgagccgccagcgcctcaagcccgccttgtccgagggcgcccacatcaactgcccg
cgctgcggcggctccggccacatccgcgacacggaaagctcggcgctgcagattctgcgc
atcatccaggaagagtccatgaaggacaacacggccgccgtgcactgccaggtgcccgtg
gaagtggcctccttcctgctcaatgagaagcgcagcgaaatcaccaagatcgagctcaag
cagcgcgtcaacgtgatcatggtgcccaacaagtccatggacacgccgcactacaagctt
gagcgcctcaagcacgacgactcgcgcctggaatccatggaagccagctacaagctggcc
gacgagcccgaagaggtgaccaccgtcacccgccgctcgcaggagcccaccaacaagcag
actcccgtcatcaagggagtgctgcccgatgctcccgcgccgattgccgagcctcgccca
ccgcgccagcctcgcgctgccgctgcgacgccagctcccgctgcggcccgccccgtggtg
cgcgagcagggcttctttgcctggctcaagaatctgttcggctttggcgcaccggctccc
gtggcagcgcccgctcccgtggcagcgcccgctcctgccgcccgtgaaggcagccgcgac
ggccgccgaagcgaaggccgtggcggcgaccgcaaccgccgtggcggtgaccgcaatgag
cgcagcgaccgcaacagcgcagagcgcaatggcagcgaacgcggcgaccgcaacaaccgc
cgcaatgcccagggtcgtgacgagcagcaacgcaacgagcgtcccgaacagcaacagcgt
caggaccgtcccgagcgcggcaaccgccgcggcggcgaacgcaacgagcgtcgcgacgag
cgccagccccaggtggcagaagctgctctgaacggcgaagagttcaacgcagctcccaag
cccgagcgcaaccgccaggaacgcggtgagcgtacagaacgcaatgagcgcggtgaaggc
cgccgcgagcgccagaatcgcaacgccgatgcccagcccgccatgcaggccgtggccgac
gaagcggtgctgaacaccgcccaggtcgacgctgcggatgcgcaggcacaggatggagcg
caaggcgatcccgcacgcgagccccgtcagcgccgttcgcgtgaccgctacggccgtgac
cgccgcgaccgtgcaccgcgcgatgcccaggcagaaggccaggctgcagagcaggctgcc
gaagcccaggccccggtcgaagtgcctgccgcagacgctggcgagcagccggcacgccgc
agctactttgatgctgttgcgcctcaggctcaggcagaacaggcgcctgttgctgcagaa
gtgcaggcacccgtggttacagaagaagccgtggtggctgtcgctcctgcggcagagccc
gtgcagcccgtgcaggcagagcctgccgcagccgcagtcgagcctgtggctgagaccgtg
gctcctgcccccgcagtcgcaacgcccaaggctcagagctatgcgctgccgattgccgag
ctgcaggccctggcagccgcatcgggtctggaatggatcaactccgatgccgaaaagatc
gccgccgtccaggctgcgattgccgccgagcccaagcccgtgcgcattccgcgcgagcgc
ccacccgtggtggtgctcgacgaaggcccgctgattctggtcgagacccgcaaggatctg
agcctgatgcagctgccgttcgagaaggaagaacaagctgcaggcgtcaacgcctaa
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