Comamonas thiooxydans: CtCNB1_1057
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Entry
CtCNB1_1057 CDS
T01109
Name
(GenBank) 3' exoribonuclease
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ctt
Comamonas thiooxydans
Pathway
ctt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CtCNB1_1057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctt03019
]
CtCNB1_1057
03016 Transfer RNA biogenesis [BR:
ctt03016
]
CtCNB1_1057
Enzymes [BR:
ctt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CtCNB1_1057
Messenger RNA biogenesis [BR:
ctt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CtCNB1_1057
Transfer RNA biogenesis [BR:
ctt03016
]
Prokaryotic type
tRNA degradation factors
CtCNB1_1057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH_KhpA-B
DUF5813
KH-I_KHDC4-BBP
aRib
Motif
Other DBs
NCBI-ProteinID:
ACY31803
LinkDB
All DBs
Position
1188172..1190415
Genome browser
AA seq
747 aa
AA seq
DB search
MTMFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTI
SLNPEVDADIAAMIAVSAALAVSGLPFNGPIGAARVGYINGEYVLNPGQTLRKDSQMDLV
VAGTESAVLMVESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAK
DEALIAKVAELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTEQGVAFDGVKVEGMLF
DIEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGT
ERDAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTK
EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIA
ATDGAKAEAAKLRIEQITAEVEIGKVYEGPIVKILEFGALVNLLPGKDGLLHISQIAHER
VEKVTDYLQEGQVVKVKVLETDDKGRVKLSMKALTERPAGMPEREPREPRGDREYRERAP
RQNREPRENREPRENRAAADEQQQQQQ
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgttcaacaaagttaccaagaccttccagtggggccagcatacggtcaccatg
gaaaccggcgaaatcgcgcgtcaggcatccggcgccgtgctggtcaatatcgacgacacc
gtggtgctggccactgtcgtgggttccaagatcgccaaggccggccaggacttcttcccc
ctgaccgttgactacatcgagaagacctatgcagccggcaagatccccggcagcttcttc
aagcgcgaagccaagccttccgagctggagactctgacctcgcgtctgatcgaccgtccc
atccgccccctgttcccagaaggcttctacaacgatgtgcatgtggtcatccacaccatt
tcgctgaaccccgaagtcgacgccgacatcgctgccatgattgctgtctccgctgctctg
gcagtgtcgggtctgcctttcaacggtcctattggtgcagcccgcgttggttacatcaat
ggcgaatacgtgctgaaccccggtcagaccctgcgcaaggattctcagatggatctggtc
gttgccggtaccgaatccgccgtgttgatggtggaatccgaagccctgcaactgcctgaa
gaagtgatgctgggcgccgtggtgttcggtcacgagcaaggcaagatcgccatcgacgcc
atccatgacctggtgcgtgaaggcggcaagcccgcatgggactggactgctcccgccaag
gacgaggcgctgatcgccaaggtggccgagctgggcgaagccaagctgcgcgccgcttac
caggagcgcaacaagcaggtgcgtaccctggcttgccgcactgcatacgccgatgtcaag
gccgccttgaccgagcaaggcgtggcgttcgacggcgtcaaggtcgagggcatgctgttc
gacatcgaagccggcatcgtgcgttcgcagatcctggcgggcgagccccgtatcgacggc
cgcgacacccgtaccgtgcgccccatcgagatccgttcctccgtgctgccccgcactcac
ggctccgcgctgttcacgcgtggtgagacccaggccttggtaatctccacgctgggtacc
gagcgcgatgctcagaagatcgacgcgctggctggcgagttcgaagaccgcttcctgttt
cactacaacatgcctccctttgccaccggcgaagtgggccgcatgggctcgaccaagcgc
cgtgaaatcggccacggccgtctggccaagcgcgctctggccgcttgcctgccgaccaag
gaagagtttccctacaccatccgcgtggtgtcggaaatcaccgagtccaacggttcctcg
tccatggcttcggtctgcggcggctgcctgtccatgatggacgccggcgtgcccatgaag
gcgcatgtggccggtatcgccatgggtctgatcaaggaagacaacaagtttgccgtgctg
accgacatcctgggtgacgaagatcacctgggtgacatggacttcaaggtggccggtacc
accaacggcatcactgccctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgccctggctcaggccaaggaagcgcgcatgcacatcctgggcaagatgcag
gaagccatgggtgaagccaagaccgaagtctccagcttcgcgcccaagctctacaccatg
aagatcaaccccgagaagatccgtgacgtgatcggcaagggcggcgccaccatccgtgcg
ctgaccgaagagaccggcacccagatcaacatcgaggaagacggcaccatcaccattgcc
gccaccgacggcgccaaggccgaagccgccaagctgcgcatcgagcagatcacggccgaa
gtcgagatcggcaaggtctacgaaggccccatcgtcaagattctggaattcggtgccctg
gtcaacctgctgcccggcaaggacggtctgctgcacatcagccagatcgctcacgagcgc
gtggaaaaggtcaccgactacctgcaagaaggtcaagtggtcaaggtcaaggttctggaa
accgacgacaagggtcgcgtcaagctgtccatgaaggcgctgaccgagcgtcctgccggc
atgcccgagcgcgagccgcgtgaaccccgtggcgatcgcgagtaccgcgaacgtgctcct
cgccagaatcgcgaaccccgcgagaatcgcgagccacgtgaaaaccgcgcagccgctgac
gagcagcagcaacagcagcagtaa
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