Comamonas thiooxydans: CtCNB1_2140
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Entry
CtCNB1_2140 CDS
T01109
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ctt
Comamonas thiooxydans
Pathway
ctt03030
DNA replication
ctt03430
Mismatch repair
ctt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ctt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CtCNB1_2140
03430 Mismatch repair
CtCNB1_2140
03440 Homologous recombination
CtCNB1_2140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctt03032
]
CtCNB1_2140
03400 DNA repair and recombination proteins [BR:
ctt03400
]
CtCNB1_2140
Enzymes [BR:
ctt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CtCNB1_2140
DNA replication proteins [BR:
ctt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CtCNB1_2140
DNA repair and recombination proteins [BR:
ctt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CtCNB1_2140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ACY32886
LinkDB
All DBs
Position
2438923..2442456
Genome browser
AA seq
1177 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKP
LLGAEIMLEGLGDAPPSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQAQHKWEWLQELG
EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAGRADDESHVLAA
VKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKFTRDQYFKTAAE
MEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSMDEFFRHESYQGLEERL
VHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFIKWAKANGCPVGPGRGS
GAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQNRDRVIDYVKDRYGR
DAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGLHVTLKYPPNPPKEGD
KYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGGVVIAPGRLADFCPLY
QQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMKRHKGQENFQFENIPL
DDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNALYRPGPMDLIPTFIA
RKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKKVE
EMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVHY
TAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVYRFEPVTDKVIRYGLGAI
KGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSRINKRTVEALIKGGAFD
TIDMNRASLMATLDTAFGFAATSIANADQGGLFDMMGDDALGSSTAEPPMADVLPWGVKE
KLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQTMAGIIGGLRTINGQRG
RLSIFTLDDKSAVIEASVDEKTMAACADVLKEDEFVVVSGRLQPDRFSGGLRMKVQQMWS
LADARCRFARYLQVSVGEKMPDVPALLRQFPAKVEETESGNINHGVKVRLDLICRDERGS
ASCELALGESSRFYPSDAALAAWYGSAAAGQVKVVYE
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtccatctgcgcctgcacaccgaattctccgtcgtcgacggaaccacccgcgtc
aatgccatgatcaaggccgccgccgaagacgggcaggtggcgatggccattaccgacttc
aacaatctgtttggcggtatcaagttctatcgcgaaggccgtggcaagggcgtcaagcct
ctgctgggcgccgagatcatgctcgaagggctgggcgacgcgccgccttcacggatcatc
gttcttgtgcagagcaagcagggctaccacaatattgccgagctgctggcacgtggctgg
acgcgcaatgtagtgcgcgatcaggcgcagcacaagtgggaatggctgcaggagctgggc
gagggactgatcgtgctgtccggtgcgcaagccggccccgtgggcattgccctgacgcgt
ggcgatgaaaaaggggcggccgagattgcccagcgcctggccaccatgttcccgcaccgc
ttctatatcgagctgcagcgcgcgggccgtgccgatgacgagtcgcatgtgctggcggcc
gtgaagctggccagccgcttgaatctgccggtggtggcgacgcacccgatccagtatgcc
aagcccgacgattacgaggcccacgaggcccgcgtctgcattgccgaaggcgagatcctg
ggcaatgccaagcgggtgcgcaagttcacgcgcgaccagtatttcaagaccgctgccgag
atggagcagctgtttgccgacattccgagcgcgatcgagaacacggtggaaattgcccgc
cgctgcagcctgacgctggagctgggcaacccgcagttgcccaatttccccgtgccgtcc
ggcatgagcatggacgagttcttccgccacgagtcctaccaggggctggaggagcgcctg
gtccacctctatcccgatgcggccaagcgcgacgcccagcgctcgcgctatgtggagcgg
ctggagttcgagctgggaaccatcatgaagatgggctttccgggctacttcctcatcgtg
tcggacttcatcaagtgggccaaggccaatggctgcccagtggggccgggccgtggctcg
ggtgccggctcgctggtggcctatgtgctcaaggtgaccgacctggatccgctggaatac
aacctgctgttcgagcgtttcctcaaccccgagcgcgtgtccatgcccgacttcgacgtg
gacttctgccagcagaaccgcgaccgcgtgatcgactatgtcaaggaccgctacggccgc
gatgccgtcagccagatcgccaccttcggcaccatggccgcacgtgcggccatccgcgac
gtgggccgcgtgctggacatgagctacaccttctgcgacggcatctccaagctgatcccg
aacaagcccggcctgcatgtcacgctcaagtacccgcccaatccgcccaaggaaggcgat
aaatacacctatgccatcaaggaggagccgattctggccgagcgcatcgagcgcgaggaa
gacgtcaagaccctgatcgagatggcgcagagcctggagggcatgacgcgaaacatcggc
atgcacgccggcggtgtggtgattgccccgggcaggctggccgatttctgtccgctgtac
cagcagcccggcagtacctcggccgtggccatgtacgacaaggatgacgtggaggccgtg
ggcctggtgaagttcgacttcttgggcctggccacgctgacgatcctggagattgcgcgc
gaattcatcatgaagcgccacaagggccaggagaacttccagttcgagaacattccgctg
gacgactacccgacctacaagctgttctccgacggcaagaccgaagccgtcttccagttt
gaatcgcgcggcatgcagcagatgctcaaggaggccaagccctcgcgtctggaagacctg
attgcgctgaacgctctctaccgccccggtcccatggacctgattcccaccttcattgcc
cgcaagcacgggcaggaagtcgtggagtacccgcatccgctggtcgagtcggtgctcgcc
gaaacctacggcatcatggtctaccaggagcaggtgatgcagaccgcccaggtgctgggc
ggctactcgctgggcggcgccgacttgctgcgccgggccatgggcaagaaaaaagtcgag
gagatggtcaagcaccggggcatcttccgcgaaggcgcagccaagaacggactgtccgag
gaaaaggccgacgaggtcttcgacctgatggaaaagttcgcgggctacggcttcaacaag
tcgcacgcggcagcctactccctgctggcctatcacacgggctggctcaaggtgcactac
acggccgagttctactgcggcaatatgaccgtggaaatggacaacaccgacaagctcaag
gtgttgtacgaggacgcgctcaagatgggcatcactttcgagatgcccgatgtgaaccgc
ggtgtgtaccgcttcgagccggtgaccgacaaggtcatacgctacggcctcggagccatc
aagggaacggggcaggcggccatcgaagccattgtggctgcgcgcaacggcgagggcaca
ggccccaacggccacgagaaaggcccgttcaagagcctgttcgacttctgcctgcgcgtg
gatcgcagccgcatcaacaagcgcaccgtggaagccttgatcaagggcggcgcctttgac
acgatagacatgaaccgcgcctcgctgatggcgacgctggacacggccttcggctttgcg
gccacctcgatcgccaacgccgaccagggtggtctgttcgacatgatgggcgatgacgcg
ctgggctcgagcacggcggagccgcccatggccgatgtgctgccctggggcgtcaaggaa
aagctgacgctggaaaaaacggctatcggcttctatctgacaggccatctgttcgacgag
gtcgaggccgaagtgcgccgctttgtgcgcactcctatcggcgagatgcgcgacagccgc
gagccgcagaccatggccggcatcatcggggggctgcgcaccatcaacggccagcgcggc
aggctcagcatcttcacgctggacgacaaatcggcggtgatcgaggcctcggtcgacgaa
aagaccatggcagcctgcgccgatgtgctcaaggaagacgagtttgtcgtggtttcgggc
cgtctccagcccgaccgcttcagcggcggcctgcgcatgaaggtgcagcagatgtggagc
ctggccgatgcacgctgccgttttgcgcgctatctgcaggtcagcgtcggggagaagatg
cccgatgtaccggcgctgctgcgccagttcccggccaaggtcgaggaaaccgagagcggc
aatatcaaccatggcgtcaaggtacgtctggacctgatatgccgcgacgagcgtggctcg
gccagttgcgagctggcgctgggcgagagcagccgcttctatccctcggatgccgcactg
gctgcctggtatggctcggccgcggcaggccaggtcaaagtggtttatgaatag
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