Comamonas thiooxydans: CtCNB1_2220
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Entry
CtCNB1_2220 CDS
T01109
Name
(GenBank) DeaD_2
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ctt
Comamonas thiooxydans
Pathway
ctt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CtCNB1_2220
09124 Replication and repair
03420 Nucleotide excision repair
CtCNB1_2220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctt03021
]
CtCNB1_2220
03036 Chromosome and associated proteins [BR:
ctt03036
]
CtCNB1_2220
03400 DNA repair and recombination proteins [BR:
ctt03400
]
CtCNB1_2220
Enzymes [BR:
ctt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CtCNB1_2220
Transcription machinery [BR:
ctt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CtCNB1_2220
Chromosome and associated proteins [BR:
ctt03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
CtCNB1_2220
DNA repair and recombination proteins [BR:
ctt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CtCNB1_2220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Mod_r
Motif
Other DBs
NCBI-ProteinID:
ACY32966
LinkDB
All DBs
Position
2534418..2536847
Genome browser
AA seq
809 aa
AA seq
DB search
MAVRALCEFTARGGDLDLRFTPAPSALEGMEGHVVVQKRREKVGGYETELALRGRFQELQ
VRGRADGFDAVKQQLEEIKTYRGQLDGVRPHHRALHWAQARVYGHLLCQERGLERIKLAL
VYFQIGSAEETVLVEEYSATELQAFFESQCAHYLVWARSEAAHRQARDAAMAQLQFPMPA
FRAGQRELAVAVYRTAHASEGGRCLMVQAPTGIGKTLATIFPLLKSMGAAMGKGATDSAG
LDKLFFLTAKGTGHGLALHALWQLQQALSASASASASASASASASASASASVAPLRVLDM
QARDKTCEHPDKACHGESCPLARGFFDRLPAARQQALQLPLWDAPALRTLALEHGICPYY
LSQELVRWADVVVADYHYYYDSAAMLYALALQQDWRVGVLVDEAHNLLERARSMYTAPLS
QFALAQARQAATGAVKKALDALQRQWQTLNKAQDQASYQSYEGIPDTLLGTVQRAVGAIA
DQLAEQEIAGHATAGGPPALADHALLDFYWELLHFQALADQFGPHALFDIQLATPQQQRA
SRVRTPASTLCIRNVVPGPHLAPRHEAAQATVLFSGTLSPPGFYRDLLGLPADTAWLDVP
SPFAARQLQVHIAGHISTRWRDREASLIPMAELIAQQYARQPGNYLCFLSSFDYLQQLAA
TLERLQPQLPLWLQQRGMDEAGRAEFLARFVEGGQGLGLAVLGGAFSEGVDLPGSRLIGA
FVATLGLPQFNPVNEAMQRAMDQAMGVGLGYDYTYLYPGLRKVVQAAGRVIRGENDRGIL
VLMDDRFARAEVRALLPAWWQIEGVDRGF
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtggcagtacgcgcgctgtgcgagttcacggcgcgcggcggcgatctggatctgcgcttc
acgcccgcgcccagtgcgctggagggcatggaagggcatgtcgtggtgcagaaacggcgt
gaaaaagtgggcggctacgagacggagctggcgctccgcggccggttccaagagctgcag
gttcgcggccgagccgatggctttgatgccgtcaagcagcaactcgaagagatcaagacc
taccggggccagcttgacggcgtacgcccccatcatcgggccttgcattgggcccaggca
agggtctacggtcatttgctgtgtcaggagcgcggtcttgagcggatcaagctggcgctg
gtctatttccagatcggcagcgcagaggagaccgtgctggtggaggaatattctgccacc
gaactgcaagcctttttcgaatcgcaatgtgcccactatctcgtctgggcacgcagcgag
gccgcccaccgtcaggcgcgcgatgcggccatggcgcagctgcagtttcccatgcctgcc
ttcagagccgggcagcgggagctggccgtggccgtctaccgcacggcccatgccagcgaa
ggaggtcgttgtctgatggtccaggccccgaccggtatcggcaagactttggccacgatt
ttccccctgctcaagagcatgggagccgccatgggcaagggggccacggattcagcaggg
ctggacaagctgttctttctcacagccaaggggactggacatgggctggcactgcacgca
ctgtggcagctgcagcaagctttgtcggcatcggcatcggcatcggcatcggcatcggca
tcggcatcggcatcggcatcggcatcggcatcggttgcgccactgcgtgtcctggatatg
caggcgcgcgacaagacctgcgagcatccagacaaggcctgccatggagagtcctgtccg
ttggcgcgcggtttctttgaccgactgcctgcggccaggcagcaggcgctgcaactgccg
ctatgggatgcgccagcgttacggactctggccctggaacatggcatctgcccctattac
ctgtcgcaggagttggtgcgctgggccgatgtcgtggtggccgactaccactattactac
gacagtgccgccatgctctatgcgctggccttgcaacaggactggcgtgtgggcgttctg
gtggacgaggcgcacaatctgctggagcgcgcgcgcagcatgtacacggcaccgctgtcc
cagtttgctctggcgcaggcccgtcaggccgcgaccggagctgtcaaaaaggcactcgat
gcactgcagcgccagtggcagacgctgaacaaggcccaggatcaggccagttaccaaagc
tacgagggcattcctgacacactgctgggcaccgtgcagcgggccgtgggtgcaatagcg
gatcaactggccgagcaggaaatagccgggcatgcgaccgcaggggggccgcccgcgctt
gccgaccatgccttgctggatttttactgggaactgctgcactttcaggcgctggccgat
cagttcgggccgcatgcgctgtttgatattcaactggccacgccgcagcagcagcgtgcg
agcagagtgcgtacgccggcatccacgctgtgcattcgcaatgtggtgcccgggccgcat
ctggcgccacgccatgaggcggcacaggccacggtgctgttttcgggcacgctgagtccg
cccgggttctaccgtgacctgctgggactgcctgccgatactgcctggctggatgtcccg
tcgccgtttgcggcccggcagctgcaggtgcatatcgcaggccatatatcgacacgctgg
cgagatcgcgaggcatcgctgatccccatggccgagttgatcgcgcagcaatatgcgcgt
cagcccggcaactatctgtgttttctcagcagctttgattatctgcagcaattggccgcc
accctggagcggctgcagccgcaactgccgctgtggctgcagcagcgtggcatggacgag
gccgggcgtgccgaatttctggcccgctttgtcgagggcggtcagggcctgggcctggcc
gtgctgggcggggcgttctccgaaggcgtggatctgcccggcagccgtctgatcggtgct
tttgttgccacgctgggtctgccccagttcaatcctgtcaacgaagccatgcagcgtgcc
atggatcaggccatgggagtggggctgggctatgactacacctatctttacccgggcttg
cgcaaggtggtgcaggcggctggccgggtcatacgtggcgagaatgatcgtggcattctg
gtgctgatggacgaccgcttcgcgcgcgccgaggtgcgtgcactgttgcctgcctggtgg
cagatcgaaggggtcgaccgaggtttctga
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