Comamonas thiooxydans: CtCNB1_4080
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Entry
CtCNB1_4080 CDS
T01109
Name
(GenBank) Sigma-55 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
ctt
Comamonas thiooxydans
Pathway
ctt02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ctt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CtCNB1_4080
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
ctt02022
]
CtCNB1_4080
02035 Bacterial motility proteins [BR:
ctt02035
]
CtCNB1_4080
Two-component system [BR:
ctt02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
CtCNB1_4080
Bacterial motility proteins [BR:
ctt02035
]
Pilus system
Twitching motility proteins
CtCNB1_4080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
HTH_23
Mg_chelatase
AAA
HTH_30
HTH_28
AAA_16
HTH_24
HTH_20
AAA_2
PDE8A_N
Motif
Other DBs
NCBI-ProteinID:
ACY34826
LinkDB
All DBs
Position
4582209..4583675
Genome browser
AA seq
488 aa
AA seq
DB search
MVDDEPDLRTLYELTLLREGYRVETAGSVQEGMTQLQGRNFDVLITDMRLPDGIGMELLL
QLRDQSRSERCIVMTAYGSAENAVEALRAGAFDYLTKPVDLRQFRQVVASAVQGIGAVPK
PGNPQASDSSAASGTGAGTPAGALEALVGKSQAMQLVKQRIAKVAKGMAPVLIHGESGTG
KELVARALHGCSQRAGGPMVAVNCGAIPESLLEAEFFGARKGSYTGATQDRPGYFQAAQG
GTLFLDEIGDLPLAMQAKLLRAIQERKIRPLGSTQEEAVDVRIVSATHRDLVAEVQAGNF
RQDLFYRLNVIEIELPALRERREDLGQLCQALLQKLARESGLATPELDDISLSQIARLPL
PGNVRELENVLHRAIALGEEGPLRLPESGVPAECAGVVAAASSGAWASSAPPPHAQHAGS
PATLPEDLQGWLDEQERSILVRALQDNGFNRTATAARLGISLRQIRYRIDRLGIDLPAEG
SKHQSDNV
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
gtggtcgatgatgaaccggatctgcgcacgctctacgagctgaccttgttgcgggaaggc
taccgcgtggaaaccgcgggctcggtccaggaaggcatgactcagttgcaaggccgcaat
ttcgatgtcttgattaccgatatgcgcctgcccgacgggatcggcatggagctgctgctg
cagctgcgcgatcagtcgcgcagcgagcgctgcatcgtcatgacggcctacggctctgcc
gaaaacgccgtcgaggccctgcgcgcgggcgcgttcgactatctgaccaagcccgtggac
ctgcgccagttccgtcaggtcgtggcttcggccgtgcaaggcattggcgcagtgcccaag
cccggcaacccgcaggccagcgacagctcggccgccagtggcactggtgcgggaacgcca
gctggcgccctggaggctctggttggcaaatctcaggccatgcaactggtcaagcagcgc
attgccaaggtcgccaaaggcatggctcccgtgctgatccacggtgaatccggcacgggc
aaggaactggtggcacgcgccctgcacggctgcagccagcgggccggcggccccatggtc
gcagtcaactgcggcgccattccggaaagcctgctcgaagccgagttcttcggtgcccgc
aagggctcctacaccggtgccacgcaggacaggcccggctacttccaggccgcgcagggc
ggcaccttgtttctcgatgaaatcggcgacctgcccctggccatgcaggccaagctgctg
cgcgccattcaggagcgcaagattcgtccgctgggcagcacccaggaagaagccgtcgat
gtgcgcatcgtcagcgccacccaccgcgacctggtagcggaagtgcaggcaggcaatttc
cgccaggacctgttctatcgcctcaatgtcatcgaaatcgagctgcccgcgctgcgcgag
cgccgtgaagacctgggccagctatgccaggccctgctgcaaaagctggcccgcgagtcc
ggactggctacgccggagctggacgacatcagcctgagccagatagcccggctcccgctg
cctggcaatgtgcgcgagctggagaacgtgctgcaccgcgccattgcactgggcgaggaa
ggcccgctgcgtctgcccgaatccggcgtgccggccgagtgcgctggtgtggtggcagcg
gcttcctcgggcgcttgggcatcgagcgcaccgccgccgcacgctcagcacgcaggcagt
ccggccacgctgccggaggatctgcaaggctggcttgatgagcaggagcgcagcatcctg
gtcagagccctgcaggacaacggcttcaaccgcacagccacggcggccagactgggcatc
agcctgcgccagattcgctaccgcatcgaccgtctgggcatagacctgccggccgaaggc
agcaaacaccagagcgacaatgtctga
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