Cronobacter turicensis: CTU_16940
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Entry
CTU_16940 CDS
T00999
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctu
Cronobacter turicensis
Pathway
ctu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CTU_16940 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctu03400
]
CTU_16940 (mfd)
Enzymes [BR:
ctu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CTU_16940 (mfd)
DNA repair and recombination proteins [BR:
ctu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CTU_16940 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CBA29998
UniProt:
C9Y1K4
LinkDB
All DBs
Position
complement(1785733..1789236)
Genome browser
AA seq
1167 aa
AA seq
DB search
MSPGFYPGQAAQPEHASPSMPEQYRYSLPVKAGDQRQLGELTGAACAVEVAEMAERHAGP
LALIAPDMQTALRLHDEIQQFTESLVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPGM
QRGVLILPVNTLMQRVCPHSFLHGHALVMQKGQQLSRDTLRAQLDQAGYRHVDQVMAHGE
YATRGALLDLYPMGSEQPYRIDFFDDEIDSLRLFDVDTQRTLEEVEAINLLPAHEFPTDK
AAIELFRSQWRDRFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFNEPLPPLFSYFPKNTL
VVSTGDLEASADRFWADAVARFENRGVDPMRPLLPPEELWLRTDELHAQLKAWPRVQLKT
EALADKAANTNLGYQPLPDIAVQAQQKSPLDSLRRFLESFTGPVIFSVESEGRREALSEL
LSRIKIAPKRLLRLEDAQEGERYLSIGASERGFIDTLRHRAFICESDLLGERVTRRRQES
RRTINPDTLIRNLAELRPGQPVVHLEHGVGRYAGLTTLEAGGITAEYLMLTYAGDAKLYV
PVSSLHLISRYAGGAEENAPLHKLGSDAWSKARQKAAEKVRDVAAELLDIYAQRAAKSGF
AFKHDKEQYQLFCEGFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA
AFLAVENNKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIELLSRFRSAKEQAQVLEQAAD
GKVDILIGTHKLLQSDVKMKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPR
TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVEN
IQKAAERLANLVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN
TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPPPKAMTTDAQKRLEAIASLEDLGA
GFALATHDLEIRGAGELLGEDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ
TEVELRMPSLLPEAFIPDVNTRLSFYKRIASAKKEQELEEIKVELIDRFGLLPDPARTLL
DIAALRQQAQKLGVRKIEANEKGGTIEFAEKNHVDPGWLIGLLQKEPQHYRLDGPTRLKF
FRELDERKNRMEWVRQFMAQLAEHTLP
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
ctgtcgccgggtttttatcccggacaagcggcacaaccggagcacgcttcgccttctatg
cctgaacaatatcgttactctctgcccgtcaaagcgggcgatcagcgtcaactgggtgaa
ctgaccggcgcggcctgcgccgtcgaggtggcggaaatggcggaacgccatgccggcccg
ctggcgcttatcgcgccggatatgcaaaccgccctgcgtctgcacgatgaaattcaacaa
tttaccgaaagcctggtgatgaatctggccgactgggagacgctgccgtatgacagcttc
tcgccgcatcaggagattatctcctcgcgcctgtcgacgctttatcagttgcctggtatg
cagcgcggcgtgctgatcctgccggtgaacaccctgatgcagcgcgtctgcccgcacagc
ttcctgcatggccacgcgctggtgatgcaaaaaggccagcagttatcgcgcgacacgctg
cgcgcccagctggatcaggcgggctatcgccatgtggaccaggtgatggcgcatggcgaa
tacgccacccgcggcgcgctgctcgatctctacccgatgggcagcgagcagccttaccgt
atcgactttttcgatgacgaaatcgacagcctgcggttgtttgatgtcgatacccagcgc
acgctggaagaagtggaagcgataaacctgctgcccgcgcacgaattcccgaccgacaaa
gcggccattgagctgttccgcagccagtggcgcgaccgtttcgaggtgaagcgcgacccg
gagcatatctaccagcaggtgagcaaaggcaccctgcccgccgggatcgaatactggcag
ccgctgttctttaacgagccgctgccgccgctgttcagttatttcccgaaaaacacgctg
gtggtgagcacgggcgatctggaagccagcgccgaccgcttctgggccgacgccgtggcg
cgctttgaaaaccgcggcgtggacccgatgcgcccgctgctgccgccggaagagctctgg
ctgcgcaccgatgaacttcatgcgcagttaaaagcctggccgcgcgtgcagctgaaaacc
gaggcgctggccgacaaagccgccaatacgaatctgggctatcagccgctgccggatatc
gccgtccaggcccagcagaaatcgccgctcgacagcctgcgccgctttctggaatctttc
accgggccggtgattttctcggtggaaagcgagggccgccgcgaggcgctctcggaactc
ctgtcccgcatcaaaatagcgccgaagcgtcttttgcggctggaggatgcgcaggaaggc
gaacgctacctgagcatcggcgcgtcggagcgcgggtttatcgatactctgcgccaccgc
gcttttatctgtgaaagcgatttgctgggcgagcgcgtcacgcgccgtcgtcaggagagc
cgccgcaccattaacccggatacgctcatccgcaacctggcggagctgcgtcctggacag
ccggtggtgcatctggagcatggcgtgggccgctacgccggtctgacgacgcttgaagcg
ggcggcatcacggcggaatacctgatgctgacctacgccggtgacgcgaagctgtatgtg
ccggtctcttcactgcatctgataagccgctatgcgggcggggccgaagagaacgcgccg
ctgcataagctcggcagcgacgcgtggtcaaaagcgcgccagaaagcggcggagaaagtg
cgcgacgtggcggcggagctgctggatatctacgcccagcgcgccgcgaaatccggtttc
gcctttaagcatgacaaagagcagtatcagctcttctgcgaaggattcccgtttgaaacc
acgccggatcaggcgcaggcgatcaatgcagtgctgagcgacatgtgccagccgctggcg
atggaccgtctggtgtgcggcgacgtgggctttggtaaaaccgaagtggcgatgcgcgcg
gcgttcctggcggtggagaacaataagcaggtggcggtgctggtgccgaccaccctgctg
gcccagcagcatttcgacaatttccgtgaccgcttcgccaactggcccgttcgcattgag
ttgctgtcgcgctttcgcagcgccaaagagcaggcgcaggtgctggagcaggccgccgac
gggaaagtcgatattcttatcggcacccacaagctgttgcagagcgacgtaaaaatgaaa
gacctcggtcttttgatcgtcgatgaagagcaccgcttcggggtgcgtcacaaagagcgt
atcaaggcgatgcgcgccgatgtcgatattctgacgctcaccgcgacgcctattccgcgc
acgctaaacatggcgatgagcggcatgcgcgatctgtcgattatcgccacgccgcccgcg
cgtcgtctggcggtgaaaaccttcgtgcgcgagtatgacaatctggtggtgcgcgaggct
atcctgcgtgaagtgctgcgcggcggtcaggtctattacctatataatgatgtcgaaaac
attcagaaagccgccgagcggctggcgaatctggtgccggaggcgcgtatcgccatcggt
cacggccagatgcgcgagcgcgaacttgagcgggtgatgaacgatttccaccaccagcgc
tttaacgtgctggtctgtaccacgataatcgaaaccggcatcgatattccgaccgccaat
accatcatcatcgaacgcgccgatcattttggtctcgcacagctgcaccagctgcgcggc
cgcgtcggtcgttcgcaccatcaggcctatgcctggctgctgaccccgccgccgaaggcg
atgactaccgatgcccagaaacgtctggaggcgatcgcctcactggaggatctgggcgcg
ggctttgcactggcgacgcacgatctggaaattcgcggcgcgggcgagctgctgggtgaa
gatcagagtggacagatggaaaccattggcttctcgctctatatggagcttctggaaaac
gccgttgacgcgctgaaagccgggcgcgagccatcgcttgaggatctcaccagccagcag
acggaagtggagttgcgaatgccgtcgctactgccggaggcgttcattccggatgtgaat
acgcgcctgtcgttctacaagcgcattgccagcgccaaaaaagagcaggagcttgaggag
atcaaagtggagcttatcgaccgctttggtctgctgccggacccggcgcgtacgctgctg
gatatcgccgccctgcgccagcaggcgcagaagcttggcgtgcgtaaaatcgaggccaat
gagaaaggcggcaccattgagtttgccgagaaaaaccatgtcgatcctggctggcttatt
ggcctgttgcaaaaagagccgcagcattaccgcctcgatggcccgacgcgcctgaagttc
ttccgcgagctggacgagcgtaaaaaccgtatggaatgggtgcgtcagtttatggcgcag
ctcgccgaacacaccctcccgtaa
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