Cronobacter turicensis: CTU_35330
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Entry
CTU_35330 CDS
T00999
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ctu
Cronobacter turicensis
Pathway
ctu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ctu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CTU_35330 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctu03021
]
CTU_35330 (rpoD)
Transcription machinery [BR:
ctu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CTU_35330 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
HTH_SUN2
D27-like_C
TMPIT
BLOC1_2
Motif
Other DBs
NCBI-ProteinID:
CBA33681
UniProt:
C9Y0D9
LinkDB
All DBs
Position
3682836..3684680
Genome browser
AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDLAPTA
THVGSELSQEEMDDDEDEDEESDDDSSDDDNSIDPELAREKFGELRTQYEVTRDTIKAKG
RSNAASQEEILKLSEVFKQFRLVPKQFDYLVNSMRIMMDRVRTQERIIMKMCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVADDVHRSLQKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagcttaagcttcttgtcacccgtggtaaggagcagggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccaaatgattaacgacatgggcatccaggtgatggaagaagcgccg
gacgccgacgatctgttgcttgctgaaaactcaaacagcaccgacgaagacgcggaagaa
gctgcggcccaggtgctctcaagcgttgaatctgaaatcgggcgcaccactgacccggtt
cgtatgtacatgcgtgaaatgggtaccgttgaactgttgacccgcgaaggcgaaattgac
atcgctaagcgcatcgaagacggtatcaaccaggttcagtgctccgtcgctgaatacccg
gaagcgatcacctatctgctggagcagtacgatcgcgttgaagcgggcgaagcgcgtctt
tccgatctgatcacgggctttgtcgatccgaacgccgaagaagatctggcgcctaccgca
acgcacgtcggctctgaactctctcaggaagagatggatgatgacgaagatgaagacgaa
gagtctgacgacgacagcagcgacgacgacaacagcatcgatccggaactggcccgcgag
aaattcggcgaactgcgtacccagtacgaagtgacccgcgacactatcaaagcgaaaggc
cgcagcaacgcggcgtctcaggaagagatcctgaagctttctgaggtgtttaaacagttc
cgcctggtgccgaaacagttcgactacctggtgaacagcatgcgtatcatgatggaccgc
gtgcgtacccaggaacgtatcatcatgaagatgtgcgttgaacagtgcaaaatgccgaag
aagaacttcatcactctcttcaccggcaacgaaaccagcgaaacctggtttaacgcggct
atcgccatgaacaaaccgtggtctgaaaagctccacgacgtggcggatgatgttcaccgc
agcctgcaaaaactgcagcagatcgaagaagaaaccggcctgactatcgagcaagttaaa
gatatcaaccgtcgcatgtctatcggcgaagcgaaagcccgtcgtgcgaagaaagagatg
gttgaagcaaacttgcgtctggttatttctatcgccaagaaatacaccaaccgcggtctg
cagttcctcgatctgattcaggaaggcaacatcggtctgatgaaagcggtagataagttc
gaataccgccgcggttataagttctccacctacgccacctggtggatccgtcaggccatc
acccgctctatcgcggatcaggcgcgcaccattcgtattccggtgcatatgattgagacc
atcaacaagctcaatcgtatctcccgccagatgctgcaggagatgggccgcgagccgacg
ccggaagagctggccgagcgcatgctgatgccggaagacaaaatccgtaaggtgctgaaa
atcgccaaagagcctatctccatggaaacgccgattggcgacgatgaagattcgcatctg
ggcgatttcatcgaggataccaccctcgagctgccgctggactccgcgaccaccgaaagc
ctgcgtgcggcgacgcacgacgtgctggccggtctcaccgcgcgtgaagcgaaagtgctg
cgtatgcgtttcggtatcgacatgaacaccgaccacacgctggaagaagtgggtaaacag
ttcgacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaagctgcgt
catccgagccgctctgaagtgctgcgcagcttcctggacgattaa
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