Corynebacterium tuberculostearicum: I6I74_00405
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Entry
I6I74_00405 CDS
T07593
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ctub
Corynebacterium tuberculostearicum
Brite
KEGG Orthology (KO) [BR:
ctub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctub03019
]
I6I74_00405 (hrpA)
Enzymes [BR:
ctub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I6I74_00405 (hrpA)
Messenger RNA biogenesis [BR:
ctub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I6I74_00405 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
ResIII
WHD_HA2
AAA_16
NACHT
SLFN-g3_helicase
AAA_25
nSTAND_NTPase5
PhoH
T2SSE
ABC_tran
TsaE
AAA_23
UvrD-helicase
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QQU81899
LinkDB
All DBs
Position
78932..82819
Genome browser
AA seq
1295 aa
AA seq
DB search
MTKNESLSRDELFAALENVTLAEARSFRRRLKKARAPKALQEIGAEIHAAAERVALTDAA
VPTITYPDALPVTTRKDDIAEAIRDNQVVIIAGETGSGKTTQIPKICLELGRGRRGFIGH
TQPRRIAARTVAERIASELDQKIGESVGYAIRFDDRVSETTAVKLMTDGILLAEMQRDRF
LNKYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIITSATIEPESFAAHFANADGN
PAPIIEVSGRTYPVEIRYRPLEFEAGGKVVDQDPLDGLTEAIEELMREGDGDILCFFPGE
RDIRDAMEAIEGKKWKNVEVTPLFGRLSNQEQHRVFSEHRGRRIVLATNIAETSLTVPGI
RYVVDTGTARISRYSTRTKVQRLPIEPISQASANQRSGRCGRVADGIAIRLYSEQDFESR
PEFTDPEILRTNLASVILQMVSLKLGDIEQFPFIQPPEHKAIRDGLTLLHELGALHDKQD
KPSLTTIGRDLSRIPLDPRMARMLIEANTNGCLDDVMVIVAAMTIQDVRERPLDFQAQAD
QAHARFKDKTSDFLSMLKLWDYIKQTRNEQSGNKFRKRMKQEFLHYMRIREWFDLVRQLK
DVAKQLGWTYQEGTERRSDDIHMSLLSGLLSNIGARDGNSKEFQGARNTRFLVFPGSALA
KKPPEFLMAAELVETSRLWARDVAAIDPAWVENLGGDLLKHNYSEPTWSRKRAAAIAHQK
STLYGVPIVADRTVPYHRVDPAAARDMFIRNALIAGDWNTHHAFFKANAQALDDAAAYEE
KARRRGLIVDEDTLFDFYDQRIPAKVTTGRHFDSWWKKERRRTPDLLDFDPAKLIDDSHD
VTEESFPDHWRKGSIDYELTYKFEPGEPLDGVTVMVPIPMLAGLDSEGFDWLVPGLRLEL
VTELIRSLPKALRRTVVPAPEFAERAIDRLIPYEGPITQQLADILRELGGQGINATDFQP
NKLPAHLRMNYGAIDKRGKIVDSDRDLAALVRRQAGHIKSSVSRVSRTSESTAVSEWTDD
TLGTIDDTVTTTVDGHEVTAYPALVATKDGVELKVHPTKAAADAAMVTTTLTLLMREISV
NAPQMVKGLPLQQRVAVDSYPHGGADGLVNDARVAAIRDLMLEAGGPVRTPSAFQQLKDT
VKPQVPGRVRQAVVAIAPGLAEYSNLRAELAHWDGPAIDDMRAQLDFLLPRNAITVHGMS
HLRHLPRYIQAMRIRLEDMNLDPDRDADRQAEVDNAKAYLSNRLRNLPAGREKTREVKDV
RWMIEELRVSLFAQRLGTAHAVSLRRIQKAVDKLR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgactaagaacgaatccctttctcgcgacgagctcttcgccgcactcgaaaatgtcact
ttggccgaggcccgctccttccgccgccgcctcaagaaggcccgcgcccctaaagcgctg
caagaaatcggcgctgaaatccatgccgcggctgagcgcgtcgcgcttaccgacgccgcc
gttcccaccatcacctaccccgacgccctccccgtcactacccgcaaggacgatatcgcc
gaggcaattcgggacaaccaggtcgtcatcatcgctggtgagaccggttctggtaagacc
acccagatcccgaaaatctgtctcgagctcggccgcggccggcgcggattcatcggccat
acccaaccgcgccgtattgcagcgcgcaccgtggccgaacgcatcgcctcggagctggac
cagaaaatcggcgagtccgtcggctacgccatccgctttgatgaccgcgtctctgagacc
accgccgtcaagctcatgaccgacggcatcctgctcgccgagatgcagcgcgaccgcttc
ctcaataagtacgacaccatcatcatcgatgaggcccacgaacgctcgctcaatatcgac
ttcctcttgggctacttgaagcgcctattgcccaagcgcccagacctcaaggtgatcatc
acctccgcaaccatcgaaccagaaagctttgcggcccactttgccaacgccgacggcaac
cccgcccccattatcgaggtctccgggcgcacctaccccgtagaaatccgctaccggcca
ctcgaattcgaggccggcggaaaagtcgtggaccaagacccgctcgacggcttgaccgag
gccatcgaagagctcatgcgcgaaggcgacggcgatattctctgcttcttccctggcgag
cgcgatatccgcgatgccatggaagccatcgaaggcaagaaatggaaaaacgtcgaggtc
actcctctctttggccgcctatctaaccaagagcagcaccgcgtgtttagcgagcaccgc
ggccgccgcatcgtcttggccaccaatatcgccgaaacctcgctcaccgtgcccggcatc
cgctatgtcgtcgataccggcaccgcccgcatctcgcggtactccacacgcaccaaggtc
cagcggctgcccatcgagcccatctcgcaggcttcagccaaccagcgctccggccgctgc
ggccgcgttgccgacggcatcgccatccgcctctacagcgaacaggattttgaaagccgt
cccgagttcaccgacccggaaatcctgcgcaccaacctcgcgagtgtcatcctgcaaatg
gtttcgctcaagctcggtgatatcgaacagttccccttcatccaaccgcccgagcacaag
gccatccgcgatggcctcaccctcctccacgagcttggcgccctccacgacaagcaagac
aagccctcgcttaccaccatcggccgcgatctttcccgcatcccactggatccgcgcatg
gcgcgcatgctcattgaagccaataccaacggatgcctcgatgatgtcatggtcatcgtt
gccgccatgaccatccaagatgtgcgcgagcgtcccctcgacttccaggcccaggccgac
caagcccacgctcgcttcaaggacaagacctcagatttcttgtccatgctcaagctatgg
gattacatcaagcaaacccgcaacgagcaatccggcaataagttccgcaagcgcatgaag
caggaattcctccactacatgcgcatccgcgagtggtttgacttggtgcgccagctcaag
gacgtcgccaagcagctgggctggacctaccaggaaggcaccgagcgccgctccgatgac
atccacatgtcactcctttcgggcctgctatccaatatcggcgcccgcgacggcaattcc
aaggagttccagggcgcgcgcaacacccgcttcctggtattccccggctctgccctggct
aaaaagccgccggaattcctcatggctgccgagctagtggaaacttcccgcctctgggcg
cgcgatgtcgccgccatcgatcccgcctgggtggaaaacctcggtggggacctgctcaag
cacaactactccgagcccacctggtctcgcaagcgcgccgccgccatcgcgcaccaaaaa
tccacgctctacggcgtgcccatcgtggccgaccgcaccgttccctaccaccgcgtcgat
cccgccgctgcccgcgatatgttcatccgcaacgcccttatcgccggcgactggaacacc
caccacgcctttttcaaggccaacgcccaagcgcttgacgacgccgccgcatacgaagaa
aaggcccgccgccgcggcctcattgtggacgaagacacgctcttcgatttctatgaccag
cgcattccggcaaaggtaaccaccggccgccactttgactcgtggtggaaaaaggagcgc
cgccgcaccccggatctgctggatttcgatcccgctaagctcatcgatgactcccatgat
gtcaccgaggaatccttccccgaccactggcgcaagggctctatcgattacgaactgacc
tataagttcgagcccggcgagcctctcgacggcgtcaccgtaatggttcccattcctatg
ctcgccggcttggattccgaaggcttcgattggctcgttccgggtctgcgcctcgagctc
gtcaccgagctcatccgcagcctgcccaaggccctgcgccgcactgtcgtacccgcgccc
gaatttgccgagcgcgccatcgaccgcctcatcccttatgaaggccccatcacccagcag
cttgccgacatcctccgcgaactcggcggccaaggaatcaacgccaccgatttccagccc
aacaagctacccgcccacctgcggatgaactacggcgccatcgataagcgcggcaaaatc
gtcgactccgaccgcgacctcgcggcgctcgtccggaggcaggctggccacatcaagtcc
tccgtatcccgcgtctcgcgcacctccgagtccaccgccgtcagcgaatggaccgacgat
acccttggcacgattgatgacacggtaacgaccaccgtcgacggccacgaagtcaccgcc
taccccgccctagtcgccacaaaggacggcgtcgagctcaaggtccatcccaccaaggcc
gccgcagatgccgccatggtcacgaccacactcaccctcctcatgcgtgagatatccgtt
aatgctccacaaatggtcaagggcttgccgttgcaacagcgcgtcgctgtcgattcctat
ccgcacggcggcgccgacggcttggttaacgacgcccgcgtagccgccatccgcgacttg
atgctcgaagccggcggcccggtccgcaccccctcggcgttccagcagctcaaggacacc
gtcaaaccccaggtcccaggacgcgtacgccaggcagtggtagctattgcccccggactt
gccgaatactccaatctgcgagccgaactcgcgcattgggacggtccagcaatcgatgac
atgcgcgcacaattggatttcctcctcccccgaaatgccatcactgtccatggaatgtcc
catctgcgtcatctcccgcgatatatccaagccatgcgcattcgtctagaggacatgaac
cttgacccggaccgcgatgcagaccgccaagccgaggtagataacgccaaggcctaccta
tccaaccgccttcgcaacctcccggccggccgcgaaaagacccgcgaggtcaaggacgta
cgctggatgattgaagaacttcgagtatctcttttcgcccagcgccttggcacagcccac
gccgtttcactccgccgtatccaaaaggcggtggacaaactgcgctaa
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