Corynebacterium tuberculostearicum: I6I74_05705
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Entry
I6I74_05705 CDS
T07593
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ctub
Corynebacterium tuberculostearicum
Brite
KEGG Orthology (KO) [BR:
ctub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctub03019
]
I6I74_05705 (hrpB)
Enzymes [BR:
ctub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I6I74_05705 (hrpB)
Messenger RNA biogenesis [BR:
ctub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I6I74_05705 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_30
AAA_11
AAA_19
Flavi_DEAD
Helicase_RecD
ResIII
AAA_16
ParA
AAA_22
nSTAND3
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QQU82843
LinkDB
All DBs
Position
complement(1222350..1224617)
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AA seq
755 aa
AA seq
DB search
MFDLARIGAGLPVAETIDSLPSTGNVVIQAPPGTGKTTLVPPALANHAAGRGKVIVTAPR
RVAVRAAAQRLSTLSGTPDKVGFAIRGESRKGSEVEFVTPGVLLRRLLKDPELEGVAAVA
IDEVHERQLDTDLVLGMCLELAELREDFRVIAMSATVDAQRFSQLMDAPVHVTEAVTHPL
DIHYAPMPGRAAGTREFYGDVAKQAARQQESTLVFVPGVREVNLVCDALAGHNVFPLHGK
QTTAEQDAALYTDEQRIVVATSIAESSLTVPGVRVVVDAGLSRVPRRDAQRGMSGLVTVS
TSKSSADQRAGRAGREAPGTVIRCYSQDDYQHFSPHTTPEILSADLTQAALFLDCWGAGP
DFPLLDPPPAQALASAQATLKRIGATQELALLPTDPRLGASLLHHGSQAAPIIASLGDAP
LTPNLTRHRPPQKEVKRLARLVDDLGPVDPGEVVATAFPEQVAKRMGEDYLLASGTRARL
LDNSGLTGSPWLAIAEVSLSNAGNAIIRSAARIEETAALDTIGITEETRAFLRDGRVRGV
KVKAAGAITLSETPVKVTGPAAEEALAAGIREEGLGLFTFSEKAQSLKDRLRHLHAHYGS
PWPDVDSADPAEWLGPELHSIAEGTPAAKLDMYPALQRLLPWPEATHLDDLAPERLPVPS
GRDARIDWSGDRPVVHIKLQECFGLAESPEYCGHRVQFHLLSPAGRPLAVTDDLASFWSG
PYAGVRADMRGRYPKHPWPEDPWNAVATARTKNRM
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatctcgccagaatcggcgcgggactgcccgtagccgagaccatcgattcgctg
cctagcaccggaaacgtcgtcatccaggccccgcccggtacgggtaaaaccacgctcgtg
ccaccagcgctggccaatcatgcggcagggcgcggcaaggtcatcgtcaccgccccacgt
cgtgtggccgtgcgcgcggccgcacagcgcttaagcacgctcagcggcaccccggacaag
gtcggcttcgccatccggggcgagtcccgcaagggcagcgaagtcgagttcgtcacgccg
ggcgtgctgctgcgccgcctgctgaaggatccggaactcgagggcgtggccgccgttgcc
atcgatgaggttcacgagcgtcagctcgatacggatttggtgctaggcatgtgcctggaa
ctggccgaattgcgtgaggactttcgcgtcatcgccatgtctgcaactgtggatgcgcag
cgcttttcccagcttatggacgcgcctgtccacgtgaccgaggcggtgacccatccgctc
gacatccactacgcccccatgccgggcagggcggcgggaacgagggagttttacggggac
gtcgccaagcaggcagctcgccagcaggaatccacgctggtctttgtgcccggcgtgcgc
gaagtcaacctcgtgtgcgatgccttagcaggccataatgtatttcccctgcatggcaag
caaaccaccgcggagcaagacgccgcgctgtataccgatgaacagcgcatcgtcgtggct
acctctatcgcggagtcctcgcttaccgtgccgggcgtgcgcgtggtggtcgatgccggg
ctctcccgcgttccccggcgcgatgcgcagcgtggcatgtccgggttggtgacggtgtct
acctcaaaatcgagtgccgatcagcgcgctggtcgtgccggccgtgaggcacctggcacc
gtcattcgctgctactcgcaggatgattaccagcacttttctccgcataccaccccggag
atcctatctgcggacctgacccaggccgcgttgtttttggactgctggggcgcgggcccg
gacttcccgttgctcgatccgccgccggcccaggccctggcatccgcgcaggcgaccctc
aagcgcattggcgcgacgcaggaactcgccctcctacccaccgatccgcgtctcggcgcc
tccttgctccaccacggcagccaggccgcgcccatcattgcctcgcttggcgacgccccc
ttaacccccaatctcacccgtcaccgcccacctcaaaaagaggtcaagcggctcgcccgc
ctggtcgacgatcttggccccgtcgatcccggggaggtcgtcgccaccgcctttcccgag
caggtggccaagcgcatgggcgaggattacctgctggccagcggcacccgcgcccgcctg
ctcgataactcgggcctcactggttccccgtggctcgccatcgcggaggtctccctgtcc
aatgcgggtaatgccatcatccgctcggccgcccgcatcgaggaaaccgcagcgctggac
accatcggcatcaccgaagaaacccgcgccttcctgcgcgatggccgcgtgcgcggcgtc
aaggtcaaggccgcgggcgccatcacgctttctgaaaccccagtcaaggtcaccggcccc
gcggccgaggaggcccttgccgccggcatccgcgaggaaggtttggggcttttcaccttc
agcgagaaagcccaaagcttaaaagaccgtttgcgccacctgcacgcccactatggctcc
ccttggcccgatgtcgattccgcggatcccgccgaatggctcggccccgaactgcatagc
atcgcggagggaactcccgccgccaagctcgacatgtaccccgcgctgcaacgcctcctg
ccctggccggaagccacccatctggacgacctcgctcccgagcgccttccggtgccctcc
ggccgggacgcacgaatcgactggtccggtgatcgccccgtggttcatatcaagctgcag
gaatgcttcggattggccgaatcccccgaatactgcggccaccgcgtgcaattccaccta
ctctcccccgccggccgcccgctcgcggtgaccgatgatctcgccagcttctggtccggc
ccctatgccggcgtgcgcgccgatatgcgcggccgctaccccaagcacccgtggcccgaa
gacccgtggaatgccgtggctaccgcgcgcaccaagaaccggatgtag
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