Corynebacterium tuberculostearicum: I6I74_09270
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Entry
I6I74_09270 CDS
T07593
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctub
Corynebacterium tuberculostearicum
Pathway
ctub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6I74_09270 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctub03400
]
I6I74_09270 (mfd)
Enzymes [BR:
ctub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6I74_09270 (mfd)
DNA repair and recombination proteins [BR:
ctub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6I74_09270 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QQU81404
LinkDB
All DBs
Position
1947626..1951264
Genome browser
AA seq
1212 aa
AA seq
DB search
MATPMLAGLLKVAASDPKLKGMISHVGEDLHITGLDQSRPWALGALAHHAPVLVVTATSR
EAEDLTAELTAMLGEKVAMFPSWETLPHERLSPGVDIIGRRAEVLHNLDSLQVIVTAARG
LSQPILQEVEGRAPVHLEEDHEYDFDEVVRELEFRAYKHVDMVAKRGEYATRGGIIDIFP
TTLDYPVRVEFWGDEITDIRQFSVADQRTIPEIEVGRVDIFPARELPITDAIAKRAADLA
VKHPGNPALVELLTKVSEHIPAEGMEALLPALSDAPMITLPEFLRPTTHVVMVGPEKTRR
RVADLEKTDAEFLAAGWEAAAMGADGPLATEGLDTEASSYRSYESLEVSISESSLPLWTF
SPPGMLAAPEEETLPLEFEPGPTPRGNIEEIDAMMAQLLAHTNAGGRAAFIAPAQGAIKR
MVDRFAEKGIRTKVATPGWEPTAGEVTLYQALSHAGLVFPKVKKPKDAEALPLVVVTETD
LTGNRVGDIAEAKRRPAKRRNKVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDETSR
REYIVLEYAPSKRGQPADQLWVPMDSLDLLSKYTGGESPHLSKMGGSDWKNTKKKARAAV
REIAGELVELYAKRQAAPGHQFSPDNPWQAEMEDNFPFVETEDQMLAIDAVKHDMESTVP
MDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVPTTLLAQQHFDTFSERMTGFPVKIE
VLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEH
IKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAA
IRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEARVVVAHGQMNEEVLEQTVQGFWDRE
YDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGAT
LTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGE
AVETFKSLARGEAPTVTDEGPKEIRIDLPVDAHIPEAYIDSERLRLEVYRKLAASQDNDD
LKAVIEEMEDRFGPLPQEVLRLLSVARLRHQARRAGISDITVQGTRVKFHPVELPDSKQV
RLKRLYPGSSFRAAAKAINVPFPKAGRNVTSPKLRDTELIQWAADFLSALFDVDPINVSG
AQPTSNVVSVGE
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccaatgctggccggcctgctcaaggtagcggcctcagatcccaagcttaag
ggcatgatttctcatgtgggcgaagacctccacatcacaggcttggatcagtcccggccg
tgggccttgggcgccttggctcatcatgccccagtgctcgtggtaaccgctacgagccgc
gaggctgaggaccttacggcggagcttacggcgatgctgggggagaaggtggccatgttc
ccctcctgggagaccctgccgcacgagcgcctgagccccggcgtagacatcatcggccgc
cgcgctgaagttctgcacaatctcgatagcctgcaggtcatcgtcaccgccgcccgcggc
ctgtcccagcccatcctgcaggaggtggagggccgcgctcccgtccacctcgaagaagat
cacgaatatgacttcgatgaggtagtccgcgagctcgagttccgcgcctataagcacgta
gacatggtggctaagcgcggcgagtacgctacgcgcggcggcatcatcgatattttcccc
accacgctggactatccggtccgcgtggagttttggggcgatgagattaccgatatccgc
caattttccgtagctgaccagcgcaccatccctgaaatcgaggtgggccgcgtagacatt
ttcccggcccgcgagctgcctattacggacgctattgccaagcgtgcagccgatcttgcc
gtcaagcaccccggcaatcccgccttggtggagctgctgaccaaggtaagcgagcacatc
ccggccgaaggcatggaggcgctcctgcccgcgctttccgacgcccccatgatcaccctc
cccgaattcctgcgccccaccacccacgtggtgatggtcggcccggaaaagactcgccgc
cgtgtggcggatctagaaaagaccgatgcggaattcctcgctgccggttgggaggccgcg
gccatgggtgccgatggcccgctggctaccgaagggctcgataccgaggcatccagctat
cgctcctatgagtcgctcgaggtctccatcagcgagtccagcctgcctttgtggactttc
tccccaccgggaatgctcgccgccccggaagaggagaccctcccgctcgaattcgagcca
gggcccaccccgcgcggcaatatcgaagaaatcgatgccatgatggcccaactcctcgcg
cacaccaatgccggcggccgggcagccttcatcgcgccggcgcaaggtgccatcaagcgt
atggtggatcgctttgcagaaaaaggcatccgcaccaaggtggccacccctggctgggag
cccaccgccggtgaagtcaccctctaccaagcactaagccacgccggcctggtatttccc
aaggtgaaaaagcccaaggatgccgaggccctcccactggtcgttgtaaccgagacggat
ctgaccggtaaccgcgtaggcgatatcgccgaagcgaagcgccggcccgccaaacgccgc
aataaggttgacccgctcgccctcaagcagggcgattttgtggtgcacgagacccacggc
atcggcaagttcctcaagatggccgagcgcaccatccagtccggcgatgaaaccagccgc
cgcgaatacatcgtgctcgagtacgcgccctccaagcgtggtcagcccgccgatcagctc
tgggtgcccatggactcgctggatctgctcagcaagtacaccggtggcgaatcgccccac
ctgtccaagatgggcggttccgactggaagaacaccaagaagaaggcgcgcgccgccgtg
cgcgaaatcgccggcgagctggtcgagctctacgccaagcgccaggccgcgccggggcac
cagttctccccggataatccgtggcaggcggagatggaggataatttccccttcgtcgaa
accgaagaccagatgctggctatcgacgccgtcaagcacgatatggagtccacggtgccg
atggaccgcgtggtcgtcggcgatgtgggctacggcaagaccgaggtggccatccgtgcc
gccttcaaggccgtgcaagacggtatgcaggtggccgtcctcgtgcccaccacgctgctg
gcgcagcagcactttgataccttcagcgagcgcatgaccggcttcccggtcaagattgag
gtgctttcgcgctttacctcaaagaaggaagccaaggacatcttcaagggcctggccgat
ggcagcgtcgatatcgtcgtcggcacccaccgcctcctacagactggcgtgcactggaag
aacctcggcctcatcgtcgtggacgaggagcagcgctttggcgtggagcacaaggaacac
attaaggcgcttaaagccagcgtggatgtgctcaccatgtccgcgacacctatcccgcgc
accttggagatgtctatggctggcatccgcgagatgtccaccatcctgaccccaccggaa
gaccgccaccccgtgctgacctacgtcggcgcttacgaggacaagcaggtagccgcggcc
atccgccgtgagctgctgcgcgatggtcaaaccttcttcatccacaacaaagtctctgat
atcgaaaagaaggcccgcgagctgcgcgacctggtaccggaggcccgcgtcgtcgtcgcg
catggccagatgaacgaggaggtgctcgagcagaccgtccagggtttctgggatcgcgag
tacgacgtattggtgtgtaccaccatcgtggaaaccggcctggatatcgctaatgcgaat
accctcattgtggaaaacgcccaccatatgggcctgtcccagctgcaccagctgcgcggg
cgcgtgggccgctcccgcgagcgcggctatgcctacttcctgtaccccaagggggccacg
ctcacggaaacctcctatgaccgcctggccaccatcgctcaaaacaatgaccttggtgcc
ggcatggccgtagccatgaaggacttggagatgcgcggtgccggtaacgtgctcggtgcc
caacagtccggtcacattgccggtgtgggcttcgatctctacgtgcgcctcgttggcgag
gcggtcgagaccttcaaatcgctcgctcgcggcgaggcccccaccgttaccgatgaaggc
ccgaaggaaatccgcatcgatctccccgtggacgcgcatattccggaggcttatatcgat
tccgagcgcctgcgtctagaggtctaccgcaaacttgcagcctcgcaagataacgatgat
ctcaaagccgtcatcgaggaaatggaagaccgcttcggcccactgccgcaagaggtgttg
cgcctgctttccgttgcccgcctgcgccatcaagcacgccgcgccggcatttccgatatc
accgtgcagggcacccgcgtcaagttccacccggtggagctgccggattccaagcaggtg
cgtctcaagcgcctatatccgggctccagcttccgcgcggcggctaaggctatcaacgtg
ccgttccccaaggcggggcgcaatgtcacctccccgaagctgcgcgataccgagctcatt
cagtgggcggcggacttcttgagcgcgcttttcgacgtcgaccccatcaacgtcagcggc
gcccagcccacctcgaacgtggtcagcgtaggggagtag
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