Cyprinodon tularosa (White Sands pupfish): 119772043
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Entry
119772043 CDS
T07496
Symbol
si:ch211-196i2.1
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119772043 (si:ch211-196i2.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctul00536
]
119772043 (si:ch211-196i2.1)
Glycosaminoglycan binding proteins [BR:
ctul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119772043 (si:ch211-196i2.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
119772043
NCBI-ProteinID:
XP_038124242
LinkDB
All DBs
Position
Unknown
AA seq
1791 aa
AA seq
DB search
MSVWVTWTVCFLSLLTRSASSSEEEFGGASGSGMLPTEEVNILQELLPQVSERSNSSMIV
GGASCPSVRVGQYATLTLPLEQIFSNSLPDEFSLLMQLRSLQREEHSVFTILSPDSLIML
QIRISAYAIIFIGTQQRHYEFPVSGLCDGKWHHIAFSVSSDHLRLYVDCLLLESVDWVNH
GLEIGTDGLLMVGGILEALEAPFEGELRQLAFLLDDPDAARQHCSHHPSRCSRSAPKPPR
SPRTNSALENASRGQEGSRGDGTIPSLPNRKGSVGRGDVFVIDEDTDLLDPIFQGGGVVN
PQWRPSRNGQNGGQKGKPDVSSKKVEENITTEKETDSRTSLVVPLKPSDNIIDLDVGGSP
KKPSLGIPLLPKMPSHPRTSTESNELIEESPDRTGIVSPTRSWTPIAAQTTKPLVHGSKP
NSEGKDPGRGRPRIVTTESRDGDLVLGSDGKTYRLKKGPPGRMGPPGPDGCPGDPGPPGL
KGDKGGKGPRGRLGKMGEPGRPGHPGSPTFYLWRNTAEEWAAFKQTNFYQLLSVGWPTKE
GPEGPPGEMGKPGIQGPPGAPGEDGQPGMPGEMGDPGPRGPPGRPGTPGKDGEDGTDGQP
GTPGPPGSHGPWGYRGERGSKGEKGDEGLVGDRGPEGEIGEPGEKGAVGLPGPPGPIGPP
GHPGVRGAEGPEGPAGPDGENGLDGPTGPPGPPGAPGLTGRVGAQGVNGSRGEIGPAGGV
GPQGPRGPPGLEGQIGPPGHRGPQGYPGLIGTAGPKGDLGPVGPVGPRGDPGFEGPMGLP
GRPGHLGFPGVTGNRGPDGDKGDLGAKGDKGVQGAAGIRGPQGERGPIGLPGFPGVSGPP
GPRGTEGVDGEAGLQGKQGRPGIKGNRGENGRPGRPGPRGNKGLNGLRGHPGQPGTFGYS
GLPGPQGAEGKPGTQGPQGADGSAGFRGPRGFPGNAGTRGPDGPPGSPGPPGKTGPLGSP
GPPGEKGFTGKPGLEGPQGPVGMYGAAGNAGIQGLPGSIGERGEPGLRGLPGPPGKPGPK
GVQGSPGDRGPRGSQGRLGDEGPKGIQGPPGPAGLPGSNGGPGKPGPRGSIGPPGPQGPQ
GPPGIPGPQGADGSMGPAGGKGPKGSPGLYGEPGPPGLSGPQGLPGQRGTEGPPGRKGDQ
GDLGACGAPGPQGPKGDRGSEGTKGPRGLAGPMGKEGEVGHPGEPGDTGPAGEKGDLGPP
GLTGQEGPWGATGENGFQGPKGEKGNNGLMGEPGLMGELGPRGLPGLQGFPGPPGPPGPD
GPQGQKGERGPVGTTGPPGLEGPQGLIGPKGVRGDPGGFGPTGQMGQAGPKGDEGVKGDP
GTLGLKGEPGVPAPAGEQGEDGPPGIQGPSGLPGLEGTPGELGAQGPPGPAGAPGTYGKP
GAEGKQGTKGEKGDDGEIGPPGKTGPIGRRGKRGKAGVRGTRGDRGPKGEKGDQGTTGLP
GWPGTIGLPGLPGDLGEQGAKGKEGEKGDMGLPGPPGPEGKKGSRGPVGLPGPAGQKGEQ
GNIGPPGPRGAMGMPGLPGLFGLKGLKGYQGPSGLPGRRGLPGPPGVPGPPGKSLNMTLA
QLKNLMYMSDKPNFSLIQMLLDSLQQELRLLLDPPDGSKEHPATTCLELWLCHPEYKSGM
YYIDPNQGSSADALLAYCVFTSSSKQTCLHPEHSQLPMKAWMEESEDGSFQWLSRLDQGH
QFTYPGASVVQMRFLRLHSVTAVQKVTYSCHPGHHLGQEERDVKFLTDTMRQSYLGELKD
CVAGEEKLFGSRESVLEFEDLQLLPLRDVAVMGGRNFTHHFSFTFGPVCFS
NT seq
5376 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtctgggtaacatggacagtttgtttcctcagcttgctgaccaggagcgcctct
tcatccgaggaggagtttggaggcgcgtctggatccgggatgctgccaacagaagaggtg
aatatactgcaggagcttttaccccaggtgtcggagcgcagtaactcctccatgattgta
gggggcgccagttgtccgtcggtcagagttggacagtacgccaccttgactctccctctg
gaacagattttcagcaatagtctgccagacgagttcagtttactgatgcagcttcgtagt
cttcagagggaagaacacagcgtgttcaccatcctcagccccgacagtcttatcatgctg
cagattcggatcagcgcctacgccatcattttcataggaacgcagcagcgacattacgag
ttcccagtcagtggcctgtgtgacggaaaatggcatcacatagccttcagtgtgtcctcc
gaccatctacggctgtatgtggactgcttgctgctggaaagcgtggactgggtcaaccat
ggcttggagatcggaactgatggtctcctcatggttggaggcatcctggaggccttagaa
gctccatttgaaggggaacttcgccagttggccttcctgttagacgaccctgatgccgcc
cggcagcattgcagtcaccacccctctcgctgcagcagatctgctcctaaacctcctcgc
tctccacgtactaacagtgccctggagaatgcgtctcgaggacaagaagggtctcgtggg
gatggaacgatcccttccttgcccaacagaaaaggctcagtgggacgtggagatgtgttt
gtgattgacgaggacaccgatctgttagatccaatatttcaaggtggtggagtagtgaac
cctcagtggagaccttctagaaatggacagaacggcgggcagaagggtaaacccgatgtg
tcttccaaaaaagtggaggagaacattacaacagagaaggaaacagattctaggacttca
ttggttgttcctctaaagccttcagacaatatcatcgacttggatgttggaggttcccca
aagaagccgtctctgggaatccctctgcttcctaagatgccctcccatccaagaacatca
accgaatcaaatgagctgatagaggaatctccagacagaacaggtattgtttcacccaca
cgaagctggacccctatcgctgcccagacaaccaaacccctggtacatggaagcaagcct
aacagtgaaggcaaagatccaggcagaggcaggcctcggattgtgacgactgaatccagg
gatggagatctggtcctgggctctgatgggaaaacgtacaggctcaagaagggaccacct
ggcaggatgggaccccccggaccagatggatgccctggtgaccctggtcctcctggatta
aaaggcgataagggtggaaagggtcctagaggccgactgggtaaaatgggggagccagga
cgccccggacatccaggttcaccaacattttatttatggaggaacactgcagaggaatgg
gccgcttttaagcaaacaaatttctaccagttactgtcagttgggtggcctactaaggaa
ggacctgaaggcccacctggagagatggggaaacctggaatacaggggccacctggtgca
cctggggaggatggacaaccagggatgccaggggaaatgggggatccaggccctaggggg
cctccaggacggcctgggactccagggaaagatggggaagatggcacagatggtcagcct
gggacacctggtcctcctggatcacatggcccgtgggggtacagaggagaacgagggtcc
aaaggagaaaaaggtgatgagggtctggttggtgatcggggcccagagggggaaattgga
gaacctggtgagaagggtgcagttggtttgccaggtccaccgggtcccattggaccacca
ggacatccaggtgtcagaggtgcagagggaccagaagggccagctgggcctgatggtgag
aacggactggatggccccacgggccccccagggccaccaggtgctccaggattgacggga
agagttggtgctcaaggagttaatggctcaaggggagaaattggaccagcaggcggtgtt
ggcccccaaggtcctcggggacctccaggtttagagggacagattggacctccgggacat
agaggaccacaaggttatccaggactgattggtacggctggtcctaaaggagatctcggg
cctgtggggccagtgggccctcggggggatcctggatttgagggccccatgggtttgcca
gggagaccgggtcatctgggtttccctggagtcacgggtaaccgtggacctgatggggac
aagggggatttgggagctaaaggcgacaaaggagttcaaggggctgcaggcattaggggc
cctcaaggcgaaagaggccctattggtttaccaggcttcccaggggtcagtggtccacct
ggccccagaggtactgagggggtagatggtgaagcaggccttcaggggaaacagggcaga
ccaggaataaaggggaacagaggagaaaatggacgtcctggcagacctggacctagagga
aacaagggtttaaatggactaagaggccaccctggacagccaggcacatttggttactct
gggctaccaggaccgcagggagcagaaggaaagcctggtacacagggcccgcagggggca
gacggcagtgctggctttaggggtcccaggggttttccaggcaatgctggtacaagagga
ccagatgggcccccaggttcaccgggaccacctgggaagacgggtcccctgggctctcca
ggtcctccaggagaaaaaggttttacagggaaaccaggcctggaaggacctcagggccca
gttggcatgtatggtgctgcagggaacgcgggaatccaaggacttccaggttcaatagga
gaaaggggtgagccaggtttaagagggttacccggtcctccaggaaagccaggtcctaaa
ggtgttcaaggttctcctggagacagaggacctcggggatctcagggccgacttggagat
gaaggacctaaaggcatccaggggccgcctgggcctgctggtcttccaggttctaatggt
gggccgggcaaacctggacccagaggaagcatcgggcccccagggcctcaagggcctcag
gggccaccaggaatcccaggtccacagggggccgatgggtcaatgggaccagccggagga
aaaggacccaaaggttcccctggactgtatggagagccaggtcccccaggactaagtgga
cctcagggtcttcctggtcaaagaggaaccgaaggcccccctggaaggaaaggagatcag
ggggacctgggtgcttgtggagcacctggacctcaagggcccaaaggagacagaggatct
gaggggacaaaaggccctcggggattagctggaccaatgggtaaagagggggaagttgga
catcctggtgaacctggggatactggacctgcaggagaaaagggtgaccttggacctcct
ggtttgacaggtcaagagggtccatggggagccactggagaaaatggtttccagggccca
aagggagaaaagggcaacaatgggctaatgggagaacctggattgatgggggagctgggt
cctagaggtctgcctgggctccagggattcccaggtcctccaggacctccaggacccgat
ggacctcagggacagaagggggagcgtgggccggtaggaaccactggaccaccaggatta
gaaggtcctcagggattaattgggccaaaaggggtcagaggtgacccagggggattcggc
ccaactggacaaatgggacaagctggaccaaagggggatgagggagtcaaaggagacccc
gggacattagggctgaagggtgaaccaggagtaccagccccagcaggagaacagggtgaa
gatggtcccccaggaatccagggtccctcaggtctaccaggattggagggaactccagga
gagcttggagctcagggtcctcctggtcctgctggggctcctgggacatatggtaaacct
ggagcagagggaaaacaaggcacaaagggagaaaagggagatgatggggaaattggacct
ccagggaaaactggtcccattgggaggagggggaaacggggaaaggctggagtcagaggg
accaggggagacagaggaccaaagggtgaaaaaggagatcaggggacaacaggccttcca
ggatggccaggaaccattggacttcctggactacctggagatctgggggaacaaggtgca
aagggaaaagagggggaaaaaggagacatgggacttcctggaccacctggacctgagggc
aaaaagggtagtagaggtccagtcggattgcccggcccagcaggccaaaaaggagaacag
ggaaacattggtccacccggacccagaggcgcaatggggatgccaggattacctggcttg
tttggattaaagggattgaaaggctaccaaggtccatctggactacctggaaggagaggg
ctcccaggtccaccaggcgttcctggtcccccaggaaagtcactaaacatgactttggct
caactcaagaacctcatgtacatgtcagacaagcctaacttctccctgatccagatgctg
ctggactctctgcagcaggagcttcggctgctgctggatcctcctgatggcagcaaggag
catccagccaccacctgtctggagctctggctctgtcaccctgaatacaaaagtggaatg
tattacatcgaccccaaccaggggagctcagcagacgcattgctggcctactgtgtcttc
acctcctcatcaaaacagacctgccttcaccccgaacactctcagcttccaatgaaagct
tggatggaggaatcagaagatggatcttttcaatggcttagcaggctggatcagggtcat
cagtttacttatccaggtgccagtgtggtccagatgcgcttcctgaggttgcacagtgtc
accgccgtgcagaaggtgacctactcctgtcatccaggacatcatctgggtcaggaagag
agagacgtcaaattcctcacagatacaatgaggcagagctacctcggagagctgaaagac
tgtgtggctggagaggagaagcttttcggttctcgggagtccgtgttggagtttgaggac
ctccagctgcttcctctgagagacgtggcggtgatgggaggcagaaactttacacaccat
tttagttttacgtttggaccggtgtgtttcagctag
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integrated database retrieval system
