Cyprinodon tularosa (White Sands pupfish): 119773007
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Entry
119773007 CDS
T07496
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03015
mRNA surveillance pathway
ctul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119773007
09123 Folding, sorting and degradation
03018 RNA degradation
119773007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119773007
03041 Spliceosome [BR:
ctul03041
]
119773007
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119773007
mRNA cycle factors
Stress granule specific factors
119773007
Spliceosome [BR:
ctul03041
]
Complex C
Other components
Complex C specific factors
119773007
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_3
RRM_occluded
HTH_58
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
119773007
NCBI-ProteinID:
XP_038125711
LinkDB
All DBs
Position
Unknown
AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFER
HEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPGPRWATQGVRPQHFQNMPNAMRASAPRPQTFNTIRATTTTNTQVPRM
MASQRMPTQALGQRPAGASATAAPVRPMPGYKYAAGVRNPQQHMASQPPVSMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagcgcgcctagctaccctatggcctccctctacgtgggggacctgcatcca
gacgttaccgaggccatgctttacgagaagttcagcccagccggacccatcctctccatc
agggtgtgcagagatatgatcacccgccgctctctgggatatgcatacgttaacttccaa
cagcccgccgatgctgaacgagctttggacaccatgaacttcgatgtaattaagggcaga
cctctccgcatcatgtggtctcagcgtgacccctcattgaggaagagcggggtgggaaac
atcttcatcaaaaacttggacaagtctattgacaacaaggccctttacgacaccttctct
gcgtttggaaacatcctgtcctgcaaggtggtttgtgatgaaaatggctcaaagggttac
ggttttgtgcactttgagacccacgaggcagctgagcgagccattgagaaaatgaacggc
atgttgctcaatgacagaaaagtgtttgtcggccgcttcaagtcacgcaaagagagggag
gctgagcttggggcacgagcccgagagtttaccaatgtttacatcaaaaactttggggaa
gacatggatgacgagaagctgaaggagttatttagcaaatatggtcctgctctcagtatc
agggtgatgacagacgagagcggcaaatccaagggatttggtttcgtcagcttcgagaga
cacgaagacgcacagaaggctgtagatgacatgaatggcaaagagctgaatggccgacag
gtgtacgtgggccgcgctcagaagaagggggagcgtcagaatgagctcaaacgtaaattt
gagcagatgaaacaagatcgcatgaccagatatcagggtgtcaatctgtatgttaaaaac
ctggacgacggcctggatgatgagcgtctgcgcaaagagttctctccattcggaaccatc
acaagtgcaaaggtgatgatggagggcggccgcagtaaaggctttggcttcgtgtgcttc
tcttccccagaagaggcgactaaagctgtgacggagatgaatgggcgcattgtggccact
aagccgctgtatgttgctctggctcagcgaaaggaagagcgtcaggcccatctaaccaac
cagtatatgcagaggatggctacggttcgcgctgtgcccaaccccgtcctcaacccctac
caacctgctccaccttcaggctacttcatggcagctattccacaggctcagaaccgtgct
gcgtattactctgccaaccagttggcccagcttcgtcccggtcctcgctgggccacccag
ggagtgcgtcctcagcacttccaaaacatgcccaacgccatgcgtgcgtcggcaccaagg
ccgcagaccttcaacaccattcgtgctaccactaccaccaacacccaggtcccacgcatg
atggcctcccagcgcatgccgacccaggctcttggccagcgtcctgccggtgcctcggcc
actgcagccccagtccgtcccatgccagggtacaaatacgctgctggtgtgcgcaatcct
cagcagcacatggcctcccagcctccagtctccatgcagcaacccgctgtccatgtccaa
ggccaggagccgctgactgcctccatgctggcggctgccccgcctcaggaacagaagcag
atgctgggtgagcgtctgttccccctcatccagaatatgcatcccagcctggctggtaag
atcactggcatgcttctggagatcgacaattctgagcttcttcacatgcttgaatctccc
gagtccctgcgctccaaggtggatgaggctgttgctgtgctgcaggcccaccaggccaaa
gaggctgctcagaagtccaccacacctgctggtgttcctagcgtctaa
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