Cyprinodon tularosa (White Sands pupfish): 119773135
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Entry
119773135 CDS
T07496
Symbol
col17a1a
Name
(RefSeq) collagen, type XVII, alpha 1a isoform X1
KO
K07603
collagen type XVII alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119773135 (col17a1a)
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GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119773135
NCBI-ProteinID:
XP_038125894
LinkDB
All DBs
Position
Unknown
AA seq
1415 aa
AA seq
DB search
MDQATTVKVISSGGGAAASSTGDFSLSSGGSGVAKGGSEGASSSHRRGSKAAKDSGGFSI
TAVEASSGGRFLAPGATASSSKGEGSKEARGGGSSSMSYSFGSGGREGKKEGGLGAVSYS
LGGTKEGRKGSSSSAMAYSPAPKERRSVTTMAAALADVFDESSDSSLEYSRKDYGSSNAM
PTATSRGRTQSRESEIRARLQSASPPARWTELDDVKRLLRGNCSTSTSPTQSPNNTLPIP
KKASVETKATPESSSEPYSSVWSGDMSSGYSFNTNPNNLSTTSHLYQAGSGVQNNLTLSA
PSMNAGQSVSSSVYGVQNNLTGPAVLSPTGCSSQIVYGVQKNAPGLSSPTVRPSSPTSYE
ASGKDFNFVLIEKENAPVKKESERRVMAKDTGKQFVSTAPATFSGTSSEDSLKREKQQFL
SSAVEEGTDGKCSTTKSSTKDKATYAEIRKDESGFGFCSCCSWWKWLLALALSLLLLLGL
LFGLIALGEEVRRLKKRVDALETVTGTASASSSRQTSSTGVNVIDPLGSGYNGGTSSGST
LGPSDNSINLGASGPGGSAGSGPGQDSAALQRMVHEIISTELRSNAVRETLSYSLKGEKG
EPGPKGDPGALGPKGDSGFPGLPGPPGPIGHSGLDGPRGPKGNPGEPGPEGQPGQRGREG
PVGPRGEAGPPGFGVKGDKGSQGEPGRPGLAGLPGVPGPKGVAGEQGIPGGQGVPGPKGF
QGEAGPPGAKGDRGTPGFPGIKGDNGERGPRGPAGEPGTPGPQGPAGTKGSKGSAGEPGS
MGPPGSRGSPGFPGDAGRQGPPGIQGPPGVAGLPGTPGSKGEPGSPGKVIAPINSDTVAV
PGPPGPAGPPGPAGPPGLSGPIGPAGVPGQQGAKGERGDKGEKGDKGDQGQRGEPGAGLP
GLPGAPGSRGEPGPQGPPGEGKQGPPGRRGPPGDPGVGNPGPPGEKGEPGSFLPTSETFF
AGPPGPPGPQGPPGDIGAQGYQGEPGQPGLPGSPGEPGFPGRPGPPGPKGDPGTAGGEPG
TTYIPGPQGPPGPPGAPGSEVPNMGQYIAEYFQGNNIRQYLAGPPGPPGPPGEPGSPGFS
EDALVDSVASRVISYIQSSGPRAPGPPGSVSVSDIITLLQRDDVRVYLTGPPGPPGPPGG
PGISGYNFNPQEVAERVFIILKERGVLGTSGAPGPPGPPGPPGNLITNGFQSLIGPPGPP
GAPGFPGPQGPPGPPGPPGFGSYVSSDIRDYLESVYLRGPPGHKGEPGLGSSIEWSPNSL
DTIMAKRVSDYIKAHGVLDDIVEDYNSRIFQGPPGPPGPPGPAWFGSPGNTTNLMEIIQS
LKHGPPGPQGPPGPPGEMQLFGSHTNVVDIMDYIKSHGEIVGPPGRPGPKGDAGLPGLPG
AKGERGFPGLQGHRGPKGDRGDFSLTTRKRRSAGV
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagcgacaacagtcaaggtgatcagctcaggtgggggggctgcagcgagtagc
acaggtgatttttctcttagctctggtggatcaggtgttgcaaaaggaggctcagaagga
gccagcagctcccatcgccgtggatccaaagccgctaaggactctgggggcttcagcatc
accgctgtagaagcttcctctggggggcggtttttggccccgggggccacagcgtcctca
agtaaaggagaggggtccaaagaggccagaggaggaggatcctccagcatgtcctacagt
tttggaagcggaggcagagaaggaaaaaaagaaggtggtctcggtgctgtgagctactcc
ttaggagggaccaaggaggggaggaaggggtcatcatcctccgccatggcctactcacct
gctccgaaggagaggaggagcgtaacaaccatggcagctgctctggcagacgtctttgac
gaaagctcggattcttctttggagtacagcaggaaagattacgggagttcaaatgcaatg
ccgactgcaacctctagagggagaactcaaagcagagagagtgagatcagagccaggctt
caaagcgcttcaccgccagcaagatggacggagctggatgacgtgaagcgcttactgagg
gggaactgctccaccagcaccagtcccactcagtcccccaacaacacgctccccattccc
aagaaggccagcgtggaaactaaggccacacctgagagctcctcagagccgtacagcagc
gtttggtcaggagacatgagcagtggatacagctttaacacaaaccccaacaacttatcc
accacctcccatctttaccaggcaggttcaggagtccagaacaacctgaccctcagcgct
ccctctatgaacgccggacagtctgtcagcagctccgtgtatggcgtgcagaacaacctg
actggtccagcagttctttcacccactgggtgcagctcacagatagtttatggagtgcag
aaaaatgcccctggattaagttcccctacagtgagacccagcagtccgacaagttacgag
gcttcagggaaagacttcaactttgtgctgatagagaaggagaatgctcccgttaaaaag
gagagcgagcggcgggtcatggctaaagacactgggaagcagtttgtgtccactgctcct
gctacattctcaggcacttcctctgaggactccctaaagagggaaaagcagcagttttta
tccagcgcagtggaggaaggaactgacggcaaatgttcaaccaccaaatcgagcacaaaa
gacaaagcaacctatgcagagattcgtaaagatgagtcgggttttggcttctgctcctgc
tgcagctggtggaagtggctgctggccctggcactcagtctgctgctcctcctagggctc
ctcttcggactcatcgctttgggtgaggaagtgagacgcctgaagaaacgtgtcgacgcc
ctggaaaccgtcactggcactgcgtcggccagctccagtcggcagacgtcctccacaggc
gtcaacgtcatcgacccactgggctccggatacaatggaggaacctcatccggctccact
cttggcccatccgataactcaatcaaccttggggcaagcgggccgggaggaagtgcagga
agtggaccgggtcaggacagcgccgccctgcagaggatggttcatgagataatcagcact
gaactacgttcaaatgctgttagagaaactctttcgtattctctaaaaggagagaaagga
gaaccaggacctaaaggtgatccaggggcgcttggaccaaagggtgacagcggctttcca
ggcctgccaggtcctcctgggccgatcgggcactcaggactggatggaccaagaggaccc
aaaggaaatccaggtgaaccaggtccagaaggacaaccaggccagagggggcgggaagga
ccagtgggcccacggggagaagctggaccacctggattcggagttaaaggagataaagga
tcccagggtgaaccaggacgtcctggtcttgctggtcttcctggagtacctggtcctaaa
ggtgttgctggggagcaggggatccctggaggtcaaggtgtacctggtccaaagggattc
caaggtgaagctggacccccgggagccaaaggggatcgtggaacaccaggttttccagga
attaaaggagataatggagaaagaggcccacgtggacctgcaggagaaccaggaacccct
ggacctcaaggccctgcaggaacaaaaggatctaaaggaagtgccggtgaacctggctcc
atgggacctcctggttcaagaggttcaccaggttttcccggtgatgccggtcgccaagga
cctcctggtatccaaggacccccaggtgttgcaggactcccaggcacgcctggaagcaaa
ggtgaaccaggatcacctggtaaagtcatcgccccgataaattctgatactgtggctgtt
cctggacctccagggccagctggacctccaggtcctgctggaccccctggtttatcgggt
cccattggtcctgctggtgtcccagggcaacaaggggcaaagggggagcgaggcgataaa
ggagaaaaaggagataagggagaccaaggtcaacgtggagagccaggggcaggacttcct
ggacttccaggggctccagggtcccggggtgaacctggccctcagggtcctcccggtgag
ggaaagcagggtccgccgggccgccgaggtcctccaggagatccaggcgtcggaaatcca
ggacctccaggagagaaaggagaacctggcagcttcttgccaacttcagaaaccttcttt
gcgggacccccggggcctccaggaccacagggtccacctggtgatataggagcacaaggt
taccaaggtgagccaggtcaacctggtcttccagggagtccaggggagccagggttccca
ggccgccctggacctccaggaccaaaaggcgacccaggaactgcaggaggtgaaccggga
accacgtatattcctggaccacagggaccacccggaccaccaggtgcaccaggaagtgaa
gtacccaacatgggccagtatattgctgaatacttccagggtaacaacattaggcaatac
ttggctggacctcctggtcctcctggacctcctggagaacctggctctcctggtttttca
gaagacgccctggtggacagcgttgccagtcgagttatttcctatatccagagttcaggt
ccaagagcacctggtccacctggatctgtctctgtcagtgacatcatcactctattgcag
cgagatgatgtgagggtataccttacgggtccacctgggccaccaggacctcccggaggt
ccaggtatcagtggctacaactttaatccacaggaggttgctgaacgtgtcttcattatc
ttgaaagagaggggggtgttggggacctctggagccccaggaccccctggtcctcctggt
cctcctgggaacctgataacaaatgggttccagtctctcatcggccctccaggacctcct
ggtgctcctggctttcccgggccacaaggtccaccaggaccacctggaccaccaggattt
gggagctatgttagctcagatatccgggactatctggagagtgtttacctcagaggccct
ccgggacataagggagagccaggtttgggcagtagcattgagtggagtccgaactctctt
gacaccattatggctaaaagagtatccgattacatcaaagcccatggtgtactggatgac
attgtggaggactacaacagtaggatctttcaaggtcctccaggaccacctgggcctcca
ggtcctgcctggtttggttcccctggaaacaccacaaatctaatggaaattatccaaagt
ctaaagcatggtcccccaggaccacagggacctccaggtccaccaggggagatgcagctg
tttggttctcacacaaatgttgttgacataatggactatattaaaagccatggagagatt
gtgggaccacctggcagaccaggaccaaaaggagacgcaggactccctggactgcccgga
gcaaaaggtgaacgaggttttccaggacttcagggacacagaggaccaaaaggggacaga
ggagatttctcgctgacaacaagaaagaggagaagcgctggtgtttga
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