Cyprinodon tularosa (White Sands pupfish): 119774180
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Entry
119774180 CDS
T07496
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctul03021
]
119774180 (scaf8)
03041 Spliceosome [BR:
ctul03041
]
119774180 (scaf8)
Transcription machinery [BR:
ctul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119774180 (scaf8)
Spliceosome [BR:
ctul03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
119774180 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
119774180
NCBI-ProteinID:
XP_038127492
LinkDB
All DBs
Position
Unknown
AA seq
1354 aa
AA seq
DB search
MEAVKAFNNELYTLTEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIITTFQHLYRCPPDDKSKIVRVLNLWQKN
AVFKSDIVQPLLDMAAGIPPPSATPVLPSSAAPINNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAATANSLNPLEQRVSSFNKKLLGSFDFGNNSERSEESKKDSSSQLPMVSESMNSSLFHQ
LAEQLQQQNLEQFQKQLLEHQQKAMSIEGQESMYGQENSVATAQTSAQQHLPEPENKMDD
SMDNQQQDMDLDDGPEGMEEELFEADEKKTLSTRSRTRSRSRSRSPKRRRSRSRSGSRKR
KHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVD
KKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTGSFKIGSKIIK
IAWALNKGVKQEYKQFWDADLGVTYIPWEKVKLDDLDDFPEGGIIDQETVNDEWESTKTS
ELSKEGTSQVVSSEATVVSNAQTETYNQQVTMMPVQLPVAQAVPGAMGLVPPTFPVTMSI
PPPGYGPPPPFLRPSFNASHPPPGYLQAPHTAGMASVTTSLVQPSVASNQDGVMPPTSTI
PGSFLPSGIPGSGVFNPVGVQTQQANSEKIPPPAEGMDAAAELTLQGMQNAVRSGMGLLG
MHPSASLPHPLHQTGLSAPRMPGLLPMDVRPNLLQPGAAARFPLLMQQGPPQQPTGLLDN
SLHPRPRPPFPQMDPFNRAPNLSNENVSKTEDESSSGADEGKDQDYRFPPMEKPSTGLLP
TPPPEHREPLGVGGGAPGGGRPPLLQTPGAQPQRSSLAGRLQALAGFTPDNRWNQSKGDF
DERDGMRGGPQPPGGPKRFQDERPPPGQNFPNRFDNRPTGPNSGPVGGPQPWNRGGGPKP
PFNSENHKDLDDRRRPWERQRDRDERDFDFRRDMNGNRHNRERERERERDRERERGREAP
RESERDRDHDKEKERGGWTPLLPLPAPLLPTPPLNPNRVLNQGKPLATLKLNPQFPAVFQ
PSPLPQGQNKPPLLRSPPTPQVQIRSPPPSQNQPPDSETHGEAPAETPQAKSPPSAGSHQ
QSPDSKTANTLPEPPAQSETPPPMQSPPESVAQVTTETAASPDTKRQHDDSPVGFSQADD
EPREDKEEGPERVPTPEPQWANGPDQDSVNVTEPTPEASPEPRSIPGSAQPESETEPRHE
RLSSPKDPNNEQSEPQEDAPSQPVVDTVTDTEGT
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagccttcaacaacgagctgtacacattgactgagtacaagccaccc
atctctaaggccaagatgactcagatcaccaagtcaggaatcaaggccataaaattctac
aagcatgtagtccagagtgtagagaagttcattcagaagtgcaaaccagagtacaaggtc
cctgggctttatgtcatcgactccattgtcagacagtcccgccaccagtttgggacagag
aaagatgtttttgccccacgcttcagcaagaacatcattacaacgttccagcacctttat
cgctgccccccagatgacaagagcaagatagtgcgcgttctgaatctgtggcagaaaaat
gcggtgtttaagagcgacatcgtccagcctctgctggacatggctgcagggattcctcct
cccagtgctactcctgtcctgcccagcagtgctgcaccgatcaataacactacacccgga
accccagctacacccgccactccagcaaatatagtccagggtctgcctgactgggcctcc
cagatcacaaacactgatactgtcgctgctgttgcacaaatactgcagagtccccaggga
caacagcttcagcagctggtccagagtctgcagatgcagcagcagaagccccagccatca
ctgctgcaggccttggatgctggcctggtggtacaattacaagctctaacagctcagcta
actgctgccacagccaacagcctcaaccctcttgagcaaagggtctcctcttttaataag
aaactgttgggttcttttgactttggaaacaattcagaacgcagtgaggaatctaaaaag
gactcatcttctcagctgccaatggtttctgaatccatgaacagctcactcttccatcaa
ctggctgaacaactccaacaacaaaacctggagcagtttcagaagcagctgctggagcat
caacagaaggccatgagcatagaggggcaggaatccatgtatgggcaggagaactctgtg
gcgacggctcagaccagcgctcagcaacaccttcctgagccagagaataagatggatgac
tccatggacaaccaacagcaggatatggatctagatgatggtcctgagggaatggaggag
gagctgtttgaagcagacgagaagaagaccttaagcacacgttccagaacacggtctagg
tcacgctccagatctcccaaacgtaggagatccaggtcccgctccggctcccggaaacgt
aaacatcgcaagcgctcacgctcccgatccagagatcgaaagaggaagtcatctcggtct
tactccagtgaaagacgcgcccgggaacgagagaaggaacggcagaaaaaagggttacca
cccatacggtccaagactcttagtgtgtgcagcactacactgtgggtgggacaggtggat
aaaaaggccacacagcaagatctcaccaatctgtttgaagagtttggccaaattgagtcc
atcaatatgatccctccacgcggatgcgcctacatctgtatggttcacagacaggatgcg
taccgcgcccttcagaaactcagcactggctccttcaagatcggctccaagatcatcaag
attgcgtgggctctgaacaaaggtgtaaagcaagagtacaagcagttttgggatgcagac
ttgggcgtcacctacataccatgggagaaggtcaagctggatgaccttgatgactttcct
gaagggggaataattgatcaagaaactgtcaatgatgagtgggaatccaccaagacttct
gaactatccaaggaaggaacaagtcaggtggttagcagtgaggccacagtggtatctaat
gcccaaaccgagacctacaaccagcaggttactatgatgcctgtacagctaccagtggcc
caagcggttcctggtgccatgggtttggtgcctcctacgtttccggtcacgatgagcata
cctcctccaggctacggaccaccgccaccatttttaagacccagcttcaatgcctctcat
cccccaccagggtatttgcaggctccacatacagcggggatggcctccgttactacatct
ctagtgcagccttctgtggcctccaaccaagatggtgtgatgcctccaactagcaccatc
cctggcagcttcctgccctcaggaataccaggaagtggtgtttttaaccctgtgggagtc
caaactcagcaggccaacagtgagaaaattcccccgcctgcagagggaatggacgcggca
gcagagctcacactacaaggcatgcagaacgcggtccgcagtggaatgggtctccttgga
atgcatccctcagcttcactaccccatccactgcatcaaacaggtctgagtgcaccaagg
atgccgggtttgttgcccatggatgtacgacccaacctccttcagcctggggctgccgcc
cgtttccccctcctcatgcagcagggccctcctcagcagcccactggcctccttgataac
tcccttcatccccgtcccaggccccccttccctcagatggacccgtttaacagagccccc
aacctctccaatgaaaatgtctccaaaactgaagatgagtcctcctctggtgctgatgag
ggcaaagatcaagactaccgcttccctcctatggaaaagcccagcacaggccttctgcct
acccctccgccagagcatagggagccacttggagtaggtgggggggctccaggaggagga
agacctccattactccaaacccccggagctcaacctcaaagatccagcttagcgggccgt
ttgcaggcgctggcaggatttactcctgataaccgctggaaccaaagcaaaggggacttt
gacgagcgagatggcatgcgtggaggaccgcagcccccaggcggtccgaaacgctttcag
gatgagcgccccccacccgggcagaacttccctaaccgctttgataaccgtccgacgggt
ccaaacagcggtcctgttgggggcccccaaccctggaaccgcggaggcggacccaaacct
cctttcaatagtgaaaatcataaagatctagatgaccgaagacgtccgtgggagagacag
agagacagggatgaacgagatttcgacttcaggagagacatgaacggtaatcgccacaac
cgcgagagagagcgggaaagggagcgggatagagagcgggaacgaggccgagaagccccc
agggagtccgaacgtgacagagaccatgacaaggagaaagaacgtggaggctggacgcct
cttctgccgctacctgcaccacttcttcctactcctcctctgaatcccaatagggtgctt
aaccaagggaaacctcttgctactcttaaattaaacccccagtttccagcagttttccag
ccatctcctttgccccaaggtcagaacaaacctcctcttctgaggagtccgccgaccccc
caggttcagatcaggtctcctcctccgtcacagaaccagccgcctgattctgagacccac
ggggaagctcctgctgaaacacctcaggcaaagtcgcccccttctgccggctcacaccaa
cagtcacctgacagcaagactgcaaacacattaccagaaccccctgctcagtcagaaacc
cccccaccaatgcagtcaccacctgagtccgtcgcccaggtgaccacagagaccgctgca
tccccagacactaagaggcaacacgacgactcacctgtgggcttctcacaggctgatgac
gagccacgagaggataaggaggaggggccagaaagggtccccacacctgaaccccagtgg
gcgaatggaccagatcaggacagtgtcaatgtgactgagcccaccccagaggcctcccca
gagcccaggtccatcccaggctctgcccagcctgaaagtgaaacggagccacggcatgag
cgcctgtcgtctcctaaggacccaaacaatgaacagagtgagccccaggaggacgctccg
agtcagccagtggtagacactgtcacagacactgaggggacataa
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