Cyprinodon tularosa (White Sands pupfish): 119774447
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Entry
119774447 CDS
T07496
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119774447 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctul03041
]
119774447 (prpf4)
Spliceosome [BR:
ctul03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
119774447 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
PRP4
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
eIF2A
Beta-prop_WDR19_1st
WD40_like
Beta-prop_DCAF12
Beta-prop_WDR11_1st
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
119774447
NCBI-ProteinID:
XP_038127895
LinkDB
All DBs
Position
Unknown
AA seq
510 aa
AA seq
DB search
MSDEEDMAPAMKKSRVFYGSLEEKERERLTLEKASNMVTGSDALRAGIKAGNINISSGET
MEMEERVSERQQEALAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKKSRKDEERAKRSHDECHQTWYHEGPSSLRDARLWLARYSLPRAMKR
LEAARAQKEVPEATKTIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWS
GLCKLWSVPDCTLIRTLRGHNTNVGAIVFRPQSGISLDQSDVNLASCAADGTVKLWNLES
DEPVADIEGHSDRVSRVSWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDIS
FHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSIHFSPNGHHLATGSGDNTCK
VWELRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWMPLKTLAGHE
GKVMGVDMSPDGKLIATCSYDRTFKLWLSE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaggaggacatggctccagccatgaagaagagtcgcgttttctacggcagc
ctggaggagaaggagcgagaacgcctcacgctggagaaggcgagcaatatggttacagga
agtgacgccttgagggcgggcatcaaggcgggaaacatcaacatctcatcaggagagacc
atggagatggaggaacgggtcagcgagcggcagcaggaagcactcgccgagtttgagcgg
cgccggcgagcccggcagatcaccgtatccaccgacgacgcggaggttaaagcaggcctc
cgagcgctgggggagccgatcacgttgttcggagagggccccgctgatcgccgtgagagg
ctgcgaagcgttttgtccgtggtcggtccagatgctctgaagaagtccaggaaagacgag
gaaagagccaaaaggtcccatgatgagtgccaccagacatggtaccatgaaggcccctcc
tccctgagggacgctcgcctgtggttggccagatactctctaccacgggcgatgaagcgt
ctcgaagccgcacgcgctcagaaggaggttcctgaggcgacaaagacgatccgccaacag
gagctccacaaatccctgaggaatctgaacaacttctgcagtcagattggagatgatcga
ccaatcagcttctgccacttcagtccggactccaaaatgctggccacggcgtcatggagt
ggcctgtgtaagctgtggtccgtccctgattgcacactgatccggaccctcagaggacac
aacaccaacgtaggagccatcgtctttcgcccgcagtccggaatatctctcgaccaatca
gacgtcaacttggcctcctgtgctgctgatgggacggtgaagctgtggaacctggagagt
gacgagccagttgcggacatcgagggtcacagtgatcgggtgtctcgggtttcctggcat
ccctccggaagattcctgggaaccacctgctacgacaactcatggcgtctgtgggacctg
gaggttcaggaggagatcctgcatcaggaaggtcacagcaaaggagttcatgacatcagc
ttccatcctgacggctcattggctgccacaggggggctggatgcgttcggcagggtttgg
gacctgaggacgggacgctgcgtggttttcctcgagggacacctaaaggagatttacagc
attcacttcagtccaaacggccaccatctggccacaggaagtggtgacaacacctgtaag
gtttgggagctgcgcaacaggaagtgtctgtacactgtccccgcccaccagaacctgctg
tcagccgtccgcttccaacccacagacggtcactttctgttgaccggagcttacgacaac
acggcgaaggtctggagccacccgggctggatgccgctgaagacgctggcaggacatgag
gggaaggtgatgggcgtggacatgtcacctgatgggaagctgatcgccacctgctcttac
gaccgaaccttcaaactctggctgtccgaatga
DBGET
integrated database retrieval system
