Cyprinodon tularosa (White Sands pupfish): 119774995
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Entry
119774995 CDS
T07496
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03030
DNA replication
ctul03410
Base excision repair
ctul03420
Nucleotide excision repair
ctul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119774995 (rfc1)
03410 Base excision repair
119774995 (rfc1)
03420 Nucleotide excision repair
119774995 (rfc1)
03430 Mismatch repair
119774995 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctul03032
]
119774995 (rfc1)
03400 DNA repair and recombination proteins [BR:
ctul03400
]
119774995 (rfc1)
DNA replication proteins [BR:
ctul03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
119774995 (rfc1)
DNA repair and recombination proteins [BR:
ctul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
119774995 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
AAA_5
RuvB_N
AAA_17
Rad17
AAA_14
AAA_33
AAA_16
AAA_18
AAA_7
nSTAND3
BRCT_2
NTPase_1
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
119774995
NCBI-ProteinID:
XP_038128763
LinkDB
All DBs
Position
Unknown
AA seq
1159 aa
AA seq
DB search
MDIRRFFGPVTGKPAPNGEVKPDEKKRKSSSEENVKKKETSKVKSSKNGDRHKGSDKKRK
KRQVIESDSEAEEEEPVMKTKKASKEKAATSRAKPPPKKDPVQYVSETDSDNDNFQSLKK
ASKSKQNCTNKKSEEDSPKIKERQKSPAKVSSSQGKTGIKSPKAPTTPKLAPPPQPKQTP
TSVLDYFGSGQIHRSDKKLVASAKRKAPTQDSDDLISDEEMARQLQMEEDMEMEKRIHED
EEFARTLAMLDTEPQAKKSRKNSEEKPATTPKKSSPMKSSRSPSGDVVGPSPKKSPAPAK
SSSKLAMMKKRDEEKDEGAKSKALNSPIKNRISPKKEPKASSISDVKFTPKTGTTPTALK
TSPKKPESTSTSPEDAEKKKMHSLAFRNFLNRDGPRALGSKEIPQGAENCLEGCVFVLTG
VLESMERDDAKTLIERYGGKVTGNVSKKTTYLVQGRDSGVSKLEKAESLGTKILDEDGLL
ELIRTKPGKKSKYEIAAEAESKASKTGSTSSQSSKSTPKAQKTSPSKGNSTSPQTPSPSK
TGQALSRGSKSSGSSTPSGRGSGQTARRELGLPSSSSSSAPGPPSPQGEAATLLWVDKYR
PRSLKAVIGQQGDQSCANKLLRWLQNWHKHHSGGTGKPAAPRYGKFGGGKDDGSGYKAAL
LSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAESLNNTSIENFYKGTSQ
TVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKNSKIPIICMCNDRNHPKIRSLANYCFD
LRFQRPRLEQIKGAMMSIAFKEGIKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMT
YDQCKSDAASARKDMKLGPFDVCRKVFAAGEETAHMSLIDKSDLFFHDYSLAPLFVQENY
LHVRPAAARGDAKSHLVLLSKTADSIADGDLVDRRIRSGQNWSLLPTQAIFASVLPGELM
RGYMSQFPVFPSWLGKNSSTNKHSRIVQELTSHMSLKTLSSRQAVNLDYLYYLRQALLHP
LQRQGAEGAAQAVQLLDDYQLLKEDVDSLMEISVWGGQPDPYSKLDSKVKAAFTRAYNKE
VHRAPYSLQAVKKGRRGGGDLELGGEEGPEDQESEDEAEGLKTDAMIKQKKTKPSKESTK
AKKEESGKGKGKGKGKAKK
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggatattaggcggttctttggaccagtgacaggaaagcctgcccctaatggagaagtc
aaaccagatgagaagaaaaggaagagttcctcagaagaaaatgtaaaaaagaaagagacc
tctaaggtcaaaagctccaaaaatggggatcgtcacaaaggcagcgacaagaaaagaaag
aaacgtcaagtcatagaatccgattctgaagcagaggaggaagagccagtgatgaagact
aagaaagcctccaaagagaaagctgccaccagcagagcaaagccccctcctaagaaggac
cctgttcagtacgtctctgaaacagactcggataatgacaacttccaaagtctgaagaag
gcttccaagtccaaacagaactgtaccaataaaaagtcagaagaagacagtccaaaaatc
aaagagcggcaaaagtcccctgcgaaggtttcctccagtcaggggaaaacagggatcaag
agccccaaagctcctacaacccctaagctagctcctcctcctcaacccaagcagactccc
acctctgtactcgactacttcggcagcggacagatccaccgctctgacaagaagctggta
gccagcgccaagcggaaggctccgacccaagactctgatgacctgatcagtgacgaggaa
atggcccggcagctgcagatggaagaggacatggagatggaaaaacgaatccatgaggat
gaggagtttgccagaacgttggccatgttggacacagagcctcaagccaaaaaatctcgc
aaaaactctgaggaaaaaccagccacgacccccaaaaagagcagcccgatgaagagcagt
cgaagcccttcaggggacgtggttggtccgtcgcccaagaagagtcctgctccggccaaa
tccagctccaagctggctatgatgaagaaacgggacgaggaaaaggatgaaggagcgaaa
agtaaagcgctaaattcgcccattaaaaatagaatttctccaaagaaggagcccaaggca
tcttcgatttcagacgtgaagttcacacctaaaacaggaaccacaccgactgcacttaaa
acgtctccaaagaagcccgagagcacaagtacgagtcctgaagatgcagagaagaagaag
atgcactctttagctttcaggaatttcctcaacagggacggaccacgagctctgggatcc
aaggaaatcccacagggagcggagaactgtttggagggttgcgtgtttgtgctgacagga
gtcctcgagtcgatggagagagacgacgccaaaactctcatcgagcgctacggaggcaaa
gtgacgggcaacgtcagcaagaagaccacctacctggtgcagggcagagacagcggggtg
tcaaagcttgaaaaggctgagagtttaggtaccaagatcctggatgaggacggtttgttg
gagctgatccgaaccaaaccaggaaagaagtcaaagtatgagattgctgcagaagccgag
agcaaagcttcaaaaactggatcaacttcaagtcaaagctcaaagagcacccccaaagct
cagaagacctctccctccaagggtaactccacttcgcctcagaccccgagcccatcgaag
accggccaggcgctgagccgaggatccaaaagcagtggtagcagcaccccatcagggaga
ggctccggacaaacggcccgcagggaactgggccttccctcttcctcctcatcttcagct
ccaggacccccatcaccccagggggaggctgccactcttctgtgggtggacaagtatcgt
ccacgttctctgaaggctgtgatcggccagcaaggggaccagagctgtgccaacaagctg
cttcgctggctgcagaactggcacaagcaccacagcggaggcacgggcaaaccagcagcg
ccaaggtacggtaagtttggaggagggaaagatgacggttcaggatacaaagctgctctg
ctctctggcccaccaggggtggggaagaccaccacagcggctctggtctgtgaggagctg
ggcttcagctacgtggagatgaacgcaagctgcacccgcagcaaaaacagcctgaaggaa
gtcgtagccgagtcgctgaacaacaccagcatcgagaacttttacaaagggacgtctcag
acggtgagcagtaagcacgtcctgatcatggacgaggtggatggtatggctgggaacgag
gaccggggaggaatccaggaaatgatcggtctgatcaaaaactccaagattcccatcatc
tgcatgtgtaacgaccggaaccaccctaagatcagatccttggccaactactgcttcgac
ctgcgcttccagaggccgcggctggagcagatcaagggagccatgatgtcaattgctttt
aaggagggaatcaagatcccccctcctgctctcaatgagatcatcttagcctccaaccag
gacgtgcggcaggtgattcacaacctgagcatgtggtcggccaaagacaaggtgatgacg
tacgaccagtgcaagtctgacgcagccagcgcccgcaaagacatgaagctggggccgttc
gacgtctgtaggaaggtgttcgccgcaggcgaagagacggcgcacatgagcctcatcgac
aagtcggacctctttttccacgactattcgctggcgccgctgtttgttcaggagaactac
ctgcacgtgcgcccagcagcggctcgcggtgatgccaagtcccacctggtgctgctcagt
aagaccgcagactctatcgctgacggtgacctggtggacagaaggatcagatcaggacaa
aactggtccctgctccccactcaggccatctttgccagcgtgctgccaggcgagctgatg
agaggctacatgtctcagttcccagtgttccccagctggctcggcaagaactcctctacc
aacaaacattcccgcatcgttcaagagctcacctcacacatgagcttaaagaccctgagc
agcaggcaggctgtgaacctggactacctgtattacctgcggcaggcgctgctgcatccg
ctccagaggcagggagcagagggcgccgctcaggccgtgcagctcctggacgactaccag
ctccttaaggaggacgtggacagcctgatggagatcagtgtctggggcggccagcctgat
ccttacagcaaactagactccaaggtgaaggcagctttcacacgggcgtacaacaaagag
gtccaccgggcgccgtactccctgcaagccgtgaagaaaggccgcagaggtggaggagac
ctggagttaggaggggaggaaggcccagaggatcaggagtctgaggacgaggcagagggc
ctgaaaactgatgctatgatcaaacaaaagaagaccaaaccaagtaaagagtcaactaag
gcgaagaaggaagagtctgggaaggggaaaggcaaggggaaaggaaaagctaagaaatga
DBGET
integrated database retrieval system
