Cyprinodon tularosa (White Sands pupfish): 119776112
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Entry
119776112 CDS
T07496
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctul00536
]
119776112
Glycosaminoglycan binding proteins [BR:
ctul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119776112
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119776112
NCBI-ProteinID:
XP_038130288
LinkDB
All DBs
Position
Unknown
AA seq
702 aa
AA seq
DB search
MEKEVKRQYRSAALHIISSLCSVASIAFCVHLSISAADVRSRVVGLESGAAERTFIQVRG
YSMEDFNSLVQQRVDELLSQRSYENFVKIRTARQASADCNCPPGPPGKRGRRGRDGEPGP
PGPPGPQGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGP
PGPRGPPGDTGKDGPRGLPGLPGDPGHPGETGLMGLEGPQGPKGSLGPPGIPGINGLKGD
VGIPGRDGIPGAKGEKGDQGEKGDMGEDGPKGDMGEKGDAGSSAAGIKGEPGEPGRSGQK
CKCPYLDVLNRRGSFYSKIFQLKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKG
EKGDHGPAGKGERGEIGPAGPKGSQGESGMPGPKGSKGDAGDKGDLGSSGPRGPPGQKGD
RGATEIIDYNGNIEEALQRITTITVTGPPGPPGPMGPQGLKGDRGLPGLPGFDGERGYKG
SKGDMGMPGASGEKGSTGLPGLPGVNGAKGDKGDPGLPGPQGPSITGPPGPPGPHGPPGP
MGPHGFPGPKGEPGLHGLKGMRGETGHKGDRGPLGLPGASGLDGKPGIRGTDGPPGPAGP
AGPKGDIGEKGAPGEPGPRGPYGLPGAAGTPGLDGLPGLKGDKGDDGERGEKGEKGKKGK
KGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQKGVTPWLVA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagaggtgaagcgacagtatcgctccgcagctctgcacatcatctcgtcttta
tgttcagtggcatccatcgcgttctgcgtccatctgagcatcagcgcggcggacgtcagg
agtcgagttgttggtttggagagcggggctgcggagcgcaccttcatccaggtccgcgga
tactccatggaggatttcaattctctggtgcagcagagagtggatgagctgctctctcag
cgctcttatgagaatttcgtcaagataaggactgcaagacaagcctcagctgactgcaat
tgccccccaggacctcctggtaagagaggaagaagaggtcgtgatggagaacctggacct
cctggtcctccaggtccacagggtgaaaagggagatcaaggtgatcagggaccacggatg
gtcttcccaaagatcaatcatggctttctttccgctgaccagcagctcataaagcgtcgg
ctcattaagggagatcaaggccaggcaggaccacccggccctcctggcccacctggccct
cctggacctagaggtcctccaggagacactggaaaggatggacccagaggtttgccaggt
ctaccaggtgatccaggccatccgggagaaacaggactcatgggacttgaggggcctcaa
gggccaaagggttctcttggacctcctggtatcccaggaattaatggactgaagggagat
gttggcatcccaggacgggacggaatcccaggcgccaagggtgaaaagggagatcagggt
gaaaagggggatatgggtgaagacggaccgaaaggtgacatgggcgagaagggtgatgca
ggctcctctgcagcaggcatcaagggggaaccgggagaacctggacggagcggacagaag
tgcaaatgcccatacctagacgtactcaatagaaggggaagcttttattccaagatattt
caattaaagggagagccaggacttccagggctgcctggactaccagggataaagggtgag
ccaggatttctcggcccccagggtgaaccgggacttccaggactcccaggaactaaaggt
gagaaaggtgaccatggaccagcaggaaaaggtgaacgtggagaaatcggacctgctggg
ccaaagggttcacaaggggagtctggaatgcctggacctaaagggtcaaagggggacgct
ggagataaaggggatttgggatctagcggtccaaggggccctccagggcaaaaaggagac
agaggagccactgaaatcatcgactacaatggaaacattgaagaggccctgcagaggatt
accactattacagtcacgggtccccctgggccacctggacctatgggaccacaaggcttg
aagggagatcgcggtttgcctggtcttcctggatttgatggggaaagagggtataaaggc
tctaaaggagatatgggaatgccaggggcttcaggagagaaaggaagcactggtttacct
ggcttaccaggagttaatggagctaaaggagataaaggagatccaggacttcccggtcca
caaggtccatctataactggacctccagggccaccaggaccccacgggcccccaggacct
atgggaccccacggcttccctggccctaagggtgaacccggtttgcatggactgaagggc
atgagaggagaaacaggacacaaaggagaccgtggaccactgggtctccctggagcctcc
ggcttggacggcaagcctggaattaggggcacagacgggcccccgggtccagctggtccg
gccggaccaaagggggacattggtgagaaaggtgcaccaggtgagccaggaccacgaggg
ccctatggactaccaggagcagctggaacaccaggtttggatgggttacctggattaaaa
ggagataaaggcgacgatggggagagaggagaaaagggggagaagggaaagaagggcaaa
aaagggcctaagggcgagaaaggagaacagggtgccccaggattagatgcaccctgccca
ttgggtccagatggattacccatgcctggctgctggcagaagggagtcacaccatggctt
gttgcctga
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