Cyprinodon tularosa (White Sands pupfish): 119776549
Help
Entry
119776549 CDS
T07496
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119776549 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119776549 (mtrex)
03041 Spliceosome [BR:
ctul03041
]
119776549 (mtrex)
03009 Ribosome biogenesis [BR:
ctul03009
]
119776549 (mtrex)
03016 Transfer RNA biogenesis [BR:
ctul03016
]
119776549 (mtrex)
Enzymes [BR:
ctul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119776549 (mtrex)
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119776549 (mtrex)
Spliceosome [BR:
ctul03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119776549 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
119776549 (mtrex)
Ribosome biogenesis [BR:
ctul03009
]
Eukaryotic type
Pre-60S particles
Helicases
119776549 (mtrex)
Transfer RNA biogenesis [BR:
ctul03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119776549 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
119776549
NCBI-ProteinID:
XP_038130932
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MADPFGEGLFSVFDDEQQSSSSKKTPTSVSTETGRSADKHGNEGDVGPSVRVKRNADNDC
GEEVVFGKKPRQETISSSDLNLSEFMPQVKVDQVETVEGCSHEVALPADEEYKPLKPRVG
KAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGGSGGGKWDRGRK
GGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQVSKLDFNNDDEKRLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KKLEEQYHTIDIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNE
DADFGWGVVVNFSKKTNTKALADSEPLYVVEVLLHCSKESVKDSATEAAKPAAPGETGEM
QVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPALKKVIQKVEAFEHRMYTHPLHSDPNLESVYSLCERKAQIATEVRTAKRELKKARTVL
QMDELKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQAT
ALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHL
MDVVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccttttggtgaaggactgttcagcgtgtttgacgatgagcaacaaagctct
tctagcaaaaagacacccacgagcgtgtctacagaaacggggaggtctgcagataaacac
ggtaatgaaggggatgtcggtccatctgttcgggtcaagaggaatgcggacaatgactgc
ggagaagaggtggtgtttgggaaaaaaccccgccaggagacgatctcatccagtgacctg
aatctttcagaatttatgcctcaagtgaaggtggaccaggtggaaacagtggaaggatgc
tcacatgaggttgctctgcctgctgatgaagaatataaacctctcaaaccaagagtggga
aaagcagctaaggagtaccctttcatactagatcccttccagcgtgaggctatcctgtgt
atcgacaacaaccagtctgttcttgtgtctgcacacacctcagcagggaaaacagtttgt
gcagagtatgccatcgctctggctcttagagagaagcagagggtcatcttcaccagcccc
atcaaagccctctctaaccagaaatacagagagatgtatgaagagttccaggacgtggga
ttgatgactggtgacgttaccatcaaccctaccgcctcctgtcttgtcatgacaacagag
attctaaggagcatgctgtatcgaggatcggagatcatgagggaggtggcatgggtcatc
tttgatgagatccattacatgagagatgcagagcgtggggttgtttgggaagaaaccatc
atccttcttcctgataatgtgcattatgtattcctgtcggctaccatcccgaacgccaaa
cagtttgctgaatggatctgccatttacacaagcagccttgtcatgtagtttataccgac
taccgtcctactccgttgcaacattatatttttccagcagggggcgatggactccacttg
gtagtcgatgagaacggcgacttcagggaagataactttaacacagcgatgcaggttctt
agagatgcaggagactctgggggtggaagtggaggtggcaagtgggatcgaggacgaaag
ggaggcactaagggaccatccagtgtttttaagatagtgaaaatgatcatggagaggaac
ttccagccagtgatcattttcagcttcagtaagaaagactgtgaggcctacgccctgcag
gtgtcaaagctggattttaataacgatgatgagaagcgtctggttgaagaagtgtttaac
aacgcagtggactgtctttcagatgaggacaagaaattgcctcaggtggagcatgtgttg
ccactgttaaagagaggaataggcatccatcatggaggcctattgcccatcctgaaagag
accatcgagatccttttttctgagggtctgttaaaggccttgtttgctacagagactttc
gctatgggcatcaacatgccagctcgcaccgtgctcttcaccagcgctcgcaagttcgat
ggcaagagtcatcgctttattacatcaggtgagtacatccagatgtctggtcgggctgga
aggagaggaatggatgacagaggaatagttattttcatggtggatgagaagatgagtcca
gctgtgggcaaacagctactgaagggctcagcagaccctttgaacagtgccttccatcta
acctacaatatggtgctgaacctgctgcgtgtagaggagatcaacccagagtatatgctc
gagaagtcattctaccagtttcagcactacagggctttgcctggcgtggttgagaaaatt
aagaagttagaggagcagtaccacaccattgatattcccaatgaggagagtgtggtgact
tactttaagatcaggcagcagctggccaagctgggaaaagagatacaggaattcatccac
aaacccaaatactgcctgcccttcttacagcctgggcgacttgtgaaggtgaaaaacgag
gatgctgattttggctggggagtggttgtaaacttcagcaagaaaacaaatacaaaggcc
ctcgcagactctgagccgctttatgtggtggaggttttgcttcactgtagtaaggaaagt
gtgaaagactctgcaactgaggcggccaagcctgctgctccaggggagactggagagatg
caggtggttccagtgatgctccatctcctcacttcaatcagctcggttcgtctttacatc
cccaaagatctcaggccttttgacaacagacaactcatgcttaagtccatacaggaggtg
cagaaacgattcccagatggcgttcctttactcgaccccatagatgacatgggtatcaaa
gacccggccctgaagaaagtgattcagaaagtggaggcctttgaacaccggatgtacaca
cacccactccacagtgacccgaacttagaatcagtctactccctctgtgagaggaaagca
cagattgcgactgaggttcgaactgccaaacgggagctgaagaaagctcggaccgtcctg
cagatggacgagctgaagtgccgaaagagagttcttcgaaggttaggcttcgccagcccc
tctgacgtcattgaaatgaaaggcagagtcgcctgtgaaatcagcagcgctgatgagctc
ctgctgacagagatggtgtttaatggcctattcaacgacctgactgtggagcaagccact
gccctgctgtcctgcttcgtcttccaagagaacgccagtgagatgccaaaactaaccgaa
cagctggctgcaccactcagacaaatgcaggagtgtgcaaagcgcatcgccaaagtgtct
gcagacgccaagctggaggttgatgaggagacttacctgaaccagttcaaaccccacttg
atggatgtagtctttgcttgggccaacggggccacattcgctcagatctgcaagatgact
gacgtctttgagggaagcataattcgttgcatgcggcgtctggaagaggtgctgcgacag
atgtgctctgcagccaaagccattggtaacactgaattggagaacaagtttgcagaagga
ataacgaagattaagagagacatagtctttgctgccagtctctatttatag
DBGET
integrated database retrieval system
