Cyprinodon tularosa (White Sands pupfish): 119776737
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Entry
119776737 CDS
T07496
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
NDNF
YjeF_N
Motif
Other DBs
NCBI-GeneID:
119776737
NCBI-ProteinID:
XP_038131252
LinkDB
All DBs
Position
Unknown
AA seq
1561 aa
AA seq
DB search
MSSDLQASRASSLWLKLSLLLSVLLLLSSGVHGQGRLKLTVLSEDRLQMKWKEADGPVQG
YKVRVRTLSEEQQPELMLTTTRGRATVAGLDSSQEYSLQVFVLNGTTEKLLAKRRFTLEG
LREEEVIRSGSRDNRRNLIPVGSGSGDLDEATAVLLNPPTVLFPDPPVSTAAATTAEPSA
TETPPEQPDEPPEKGTREKRKRKKERHRSTLEDKEEQGRKQEILPRKPYQCESDAAADIV
LLVDGSWSIGRTNFRRVRDFLEGLVTPFKVGPNHIQIGLTQYSGDPRTEWHLNNFTTKQQ
LLEAVRNFRYKGGNTFTGQALLHVMEENMKTEVGSRANVPSFLVLLTDGKSQDDAIAAAN
RLKNAGVEIIAVGVKNADEAELRQVVSEPVDLNVYNVNDFPLLSKLVARLVHILCARVED
RSISKRMEPRPSVEPQLSFPGPTSLRFSQLGSRQVKLHWTNPSQPVQQYRVVYHSAASQS
PEEVVLSGAESTVLLDGLSSQTLYHISIFPVFASSVGSALRGTVTTLPLAMPSGLAVTPS
SYSSLQVRWSAAPGATDYMILYSALSDGEPDDAKEEKFSAGQTGVELAGLLPETDYSITL
YALYDEDPSDPVTSVARTLPLPAPAGVQFPTVTHSMIKVSWVPGAVDVPAHRITYSTNHG
SNIKQVEVEGQNSVLVQSLASLSTYLVSVQSRYPQGLSAPLTSNVTTLKVPSPSDLRVTN
FSGSEMAVRWEAAADDVVYYLIKWISLSEGDLRQLKVGGDSKEAILGGVEEDKEYQISLS
ALYGDGAQSEAVATRYSTLSGGGPSSVSISEETAVSMAVSWVPPNAHVLQYRVTYAPLTG
AETPDRTVLVPGGQKRVVLDSLQPDTRYSVLVTAEYRNQEGGSGSAQGKTASLRVSSISV
VRSDQSSICLSWRPVSAVDGYRVVIQSVKDKLTKQQTVDRSTSSYCFSHLEPQTLYRISM
HALLGPAEGATVSILHPTAPAPARLPPRVYPVHNEVCPEVTIQNHIVKGYNMMEAFGLTQ
RGYSSVEGVAAEPFVFNTLPTFTLYRDVQLTQSTKLVHPAGFSPEHTISITFRLLQDTPR
EAFALWQLTDSDYQPKMGVVIDPSTKHLMYFSLDYRGEVQQLTFDQPQVHKIFYGSFHKV
HLSVSQVSVSLSVDCQPVGERPARPLGNLPTDGFEMLGKLVRSKGPNSGSAPFQLQSFEI
VCNTSWASADTCCDLPAARDEESCPAQPFTCSCSSNIPGAPGPPGPTGRPGPRGEKGDRG
EQGQKGEEGPPGKPGFQGGLGPVGSVGPRGIAVQGKMGPPGARGEKGDPGRPGVQGLPGP
PGPKGEEGIPGPQGIRGVEGNIGSPGVTGARGFQGLPGHPGLMGERGPSGPVGPTGLPGN
KGERGEKGETQSMALIYQLVTQACEQLVHKEVLKLDSYINEISRKPVPIEEPVGPPGEPG
IPGSRGPPGARGNQGEVGSRGRPGRPGYPGEQGRRGIPGEKGDPGNNVQGPSGVKGFAGP
PGESKLGDPGPKGNDGKPGPPGVPGPPGQPGEVGPGGVCDSSGGCHNAPGQTEDPYYGYQ
P
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgacctgcaagcatccagagcgtcgtccctctggctgaagctgagtctgctg
ctcagtgtcctcctgctgctgtcctctggagtccatggccagggtcgcctgaagctgacg
gttctgtctgaagatcggctgcagatgaagtggaaggaggccgatggacccgttcaaggc
tacaaagttcgggtcagaaccttgtcagaagagcagcagccagagctaatgctgaccacc
accaggggccgggccaccgtggcaggactggactccagccaggaatactcgctccaagtc
ttcgtcctgaacgggaccacagagaagcttctggcaaaaagaagattcaccttggagggt
ctccgagaggaggaggtgatccgcagcggtagccgtgacaaccggaggaatctgatccca
gtggggtcaggttccggggacctggatgaagcgacggcggttctactgaacccaccaacg
gttctgttcccagacccgcctgtctccactgctgccgccacgactgcagagccctcagca
acagaaacccctcccgaacaacctgatgagcccccagagaaaggcaccagagagaagagg
aagaggaagaaagagcggcatcgttccacgctggaggacaaggaggagcaggggaggaaa
caggagattcttccgaggaaaccttaccagtgtgagagcgacgcagcggcagacatcgtg
ctgttggttgacggctcctggagcatcggacgcaccaacttcaggcgcgtcagagacttc
ctggaggggctggtgacacctttcaaagtcggaccaaaccacattcaaatcgggctgacc
cagtacagcggagaccctcgcacagagtggcatctcaataacttcaccacaaaacagcag
ctgttggaggcggtgaggaacttcaggtataaaggaggaaacacctttacaggacaggca
ctgctgcacgtcatggaggaaaacatgaagaccgaggtgggatccagagccaacgtacca
tctttcctggtcctgttgactgatgggaagtctcaggatgatgccatcgcagcagctaac
cggcttaagaacgcaggcgtggaaatcatcgctgtaggtgttaaaaatgctgacgaagca
gaactgagacaggtggtgtcggagccggtcgatctgaacgtctacaatgtgaacgacttc
ccgctgctcagcaaactggtggctcggctggttcacatcctgtgtgcgagggtggaggac
cgcagcatctccaaacgaatggagcccagacccagtgtggaaccacagctttcctttccc
ggtccaaccagtctgcgcttttcccagcttggatccagacaggtgaagctgcactggacc
aatcccagccagccggtccagcagtacagagtggtttaccacagcgcagccagtcagagt
ccagaggaggttgtgttatccggcgctgagtccaccgttctgctggatggactctcctcc
cagacgctgtatcacatctccatattccctgtgttcgccagcagcgtcggctcggcgctc
agaggaaccgtcaccacattgcctctggccatgccctcaggcctggcggtgactccttcc
tcctacagcagtctgcaggtcagatggagcgcagctcctggggctactgactacatgatc
ctgtactctgcgctgagcgatggagagccggatgacgctaaggaggagaagttcagtgca
gggcagacgggggtggagcttgcaggcttgcttccagagacggactactccatcacactt
tatgctctttatgatgaagatcccagtgatccggtcacctcggtagcccgtaccttaccc
ctcccagccccggctggagttcagttcccgactgtcacccacagcatgataaaggtgagc
tgggttcctggtgctgtggacgtcccggcccacagaatcacctacagcaccaaccatggc
agcaacattaagcaggtggaggtagagggacagaactctgtgctggttcaaagccttgca
tctctgtccacatacctggtttcagtccagtctcgttacccacaaggcctctccgcccca
ctcaccagtaacgtcacaacactgaaggttccttctccatcggatctcagggtgactaac
ttctcaggcagtgaaatggcggtgcgctgggaggcggcggcagacgatgtggtctattac
ctcattaaatggatctccttaagtgagggagatctgcggcagctgaaggtgggcggagac
agtaaggaggccatcttggggggtgtggaggaggataaggaataccagatctctctgtct
gctctgtatggagatggagctcagagcgaggcagtggccactcgatacagtaccttgtca
ggcggaggcccgtccagcgtgtccatctcagaggaaactgcagtcagcatggcggtgagc
tgggtgcctccgaacgctcacgtcctccagtatcgtgtgacttacgcccccctgacggga
gccgagaccccggacaggactgtgttggtcccaggtggtcagaagcgggtggtgctggac
tcattacagccggatacacgttacagcgtcttagtcaccgcagagtatcgcaaccaagag
ggaggcagcggctcggctcagggcaaaaccgccagtctgcgtgtgagcagcatcagcgtg
gtccgatcggaccagtccagcatctgtctgtcctggaggccggtctctgcagttgatggg
taccgggttgtcatccagtctgttaaagacaagctaacgaagcagcaaaccgtggaccgg
tccaccagcagttactgcttcagccacctggagccccagactctgtaccgcatcagcatg
cacgccctcctcggccctgcagagggcgccaccgtctctattctccatcctacagctcca
gctccagccaggctccccccccgggtgtatcctgtccacaatgaagtctgtcctgaagtc
accatccagaaccacatcgttaaaggttacaacatgatggaggccttcggtctgacccag
agaggctactcatcggtggagggggtggcagccgagcccttcgtctttaacaccctcccc
accttcactctgtacagagatgtgcagctgacacaaagcaccaagttagtccaccctgct
ggtttctctccagagcacaccatcagcatcaccttccggctgctgcaggacacaccgagg
gaggccttcgctctctggcagctcactgactctgactaccagccaaagatgggggtggtc
atagacccgtctaccaaacacctgatgtacttcagtctggactacaggggagaagttcag
cagctcacctttgatcagccacaggtccacaagatcttctatggaagttttcacaaggtc
cacctgtctgtcagccaggtgagcgtctccctgtcggtggactgtcagcctgtgggtgaa
aggcccgcccgtcctctggggaacctgccgaccgatggattcgagatgctgggcaaactg
gtgagaagcaaaggacctaacagcggctccgccccgtttcagctgcagtcctttgagatc
gtctgtaacaccagctgggcgtccgcggacacctgctgtgaccttcctgcagcgagagat
gaggagagctgtcctgcacagccgtttacatgttcctgctcctccaacattcctggggct
ccgggtcctcctggaccaaccgggagaccaggtcctcgtggagagaagggagatagggga
gagcaaggccaaaagggggaggaaggccccccagggaagcctgggttccaagggggtctt
ggacctgtgggcagcgttgggccccgaggcatagcagtccaaggcaaaatgggtccacca
ggagcaaggggggaaaagggagatcctgggaggcctggtgtccaaggtttacctggaccc
ccaggtccaaagggagaggaggggatccctggcccccagggcatcagaggcgtggaagga
aacattggctccccgggtgtcactggagccaggggttttcaaggacttcctggacaccca
ggactcatgggagagagaggaccttctggacctgttggaccaacaggtctgccaggaaac
aaaggggagcgaggggaaaagggggaaactcagtctatggcactgatctaccagctggtc
acacaggcctgtgaacaactggtccacaaggaggtgttaaagcttgattcctatatcaat
gagatcagtcgaaaacctgttcctattgaggagccagtaggtcccccaggggaacctggc
attccaggctccaggggcccaccaggtgccagggggaaccagggggaagttggctcaaga
gggagacctgggaggccgggatacccaggagagcaggggaggagaggaattccaggagaa
aagggggatccaggaaataatgtccagggaccctcaggagtcaaagggtttgcaggtcct
ccaggggagtccaagctgggggacccaggtcccaaaggaaatgatggcaagccaggacca
ccaggggtccccgggcctcctggtcagccgggagaggttggacctgggggggtttgtgac
agcagtggaggctgtcacaatgctccaggacagacagaagacccttattatggctaccag
ccctga
DBGET
integrated database retrieval system
