Cyprinodon tularosa (White Sands pupfish): 119777161
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Entry
119777161 CDS
T07496
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctul03021
]
119777161 (chd1)
03036 Chromosome and associated proteins [BR:
ctul03036
]
119777161 (chd1)
Transcription machinery [BR:
ctul03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
119777161 (chd1)
Chromosome and associated proteins [BR:
ctul03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
119777161 (chd1)
SLIK complex
119777161 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
ResIII
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
119777161
NCBI-ProteinID:
XP_038131887
LinkDB
All DBs
Position
Unknown
AA seq
1751 aa
AA seq
DB search
MLADATRFSTRIHFSCRDSNMAGRSEDESVSNSNGESSNSDEESGSGSGSGSGSDSGSSS
SSSSSSSQSESSDSGSGSDSGSQSESETEKSTEKTEAPRKPNIDGAEFWKSNPSILAVQR
SAMLRKQQQQQQQRRGSSHSGSDEDSSSSDESDTSSGSKKRGNSGSSNSGSGSGSDSGSD
SSAEENSNETASDYEPSLKFKSRKPPTKMNSRNGTKSMGQRKKSQKCSSSEDENNFSKVA
SGGPRRQATVNVSYKEADEMNTDSDDLVEVLGEDVPLPEEEEFETIERVMESRLGRKRAT
GSATTVYAVEADGDPNANFDPSKEAGEVQYLIKWKNWAHIHNTWETEETLKLQNVRGMKK
LENFKKKEQEKRKWLKAASPEDREYFNCQEELMDDLHSQYRLVERILGHSNQKSAAGYPD
YLCKWQGLPYSECSWEDGALIAKKFQKCIDDYMSRNQSKTIPSRDFKLMKQRPRFVAMKK
QPAYIGGEGLELRDYQLDGLNWMAHSWSKGNSCILADEMGLGKTIQTISFLNYLFHEHQL
YGPFLLVVPLSTLTSWQREILLWAPKMNVVVYLGDISSRNMIRTHEWMHVHNKRLKFNIL
LTTYEILLKDKSFLGGVNWAFIGVDEAHRLKNDDSLLYKTMIDFKSSHRLLITGTPLQNS
LKELWSLLHFIMPEKFHSWEMFEEEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAK
VEQILRVEMSAIQKQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPD
DNEALNKTEALQQLIRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLKSKNF
YFQRLDGSIKGEMRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQ
NDLQAQARAHRIGQKRQVNIYRLVTKSSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLH
TGAAPSSSAPFSKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPS
TVGEELLSQFKVANFSMMDDEDLDIDSERSQRSWDDIIPEEQRRRMEEEERQKELEEIYM
LPRMRNCAKQISFNSDRRQSRNRRYSGSDSDSNSDRKRPKKRGRPRTIPRENIKGFTDAE
IRRFVKSYKKFGGPLERLDAIARDAELVDKSEHDLKRLAETVHNGCLRTLRENPCGPEKA
SAGRRGKVKGPTFRISGVQVNAKLVISHEEELAPLHKAIPADPEERKKYMIPCHSKAAHF
DIDWGKEDDSSLLIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQARADYL
IKLLSKDLAKKEAQKQAGAANSRKRKPRRKLSKAQKSGKGEEAMKSPSSDLTSDKRSEDE
NEFDLEKKMAGKAASKRSQGEEEEEHQHDASSSEEKDDKEREEKKEKADGCDLKDRREMK
LFDPVQKQEDDEEKIEVKTEVRDRTKKASSAPSAAESLSVCEEAEELDQRTFSVCKERMR
PVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITQCLKEYSHPDHIKQWRKNLWIFV
SKFTEFDARKLHKLYKHAIKKRHENVQAVEQNTRSAQSYKHADVERLKDSVHQDDSSRDS
YSSERHPPSGRHHHHHHDGGRESHRKGGGESRKRAYSSFSNGKDHRDHYRGDRYDGKHRK
LEEQRSSREHRPDGKEDYRSAYHYHSDWLSDQRGAAAVRSPRDERSPCDSPFDYSSDHKS
TPEQMWSSRKT
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atgctagctgatgctacacggttcagcaccaggatccacttctcctgcagggactccaac
atggcaggacgcagtgaagatgaaagtgtcagcaacagcaacggagagtccagtaattct
gatgaggagtccggttctggatctggttctggttctggttcagactccggctccagttcc
agctcctccagcagcagcagccaatcggagagcagcgactcaggaagcggctctgactct
gggagtcagtccgagtcagagacggagaaatccactgagaagacggaggcccccaggaag
ccgaacattgacggggccgagttctggaagtccaaccccagcatcctggcggtgcagaga
tcagcgatgctcaggaagcagcagcagcagcagcagcagagacgaggctcctcccacagc
gggtcagacgaggactcttccagtagtgatgaatcggacacctcgagcggatccaagaag
agagggaattctggctcgtccaactctggatcgggttctgggagtgattccggctcagac
tcttcagcagaagaaaacagcaatgaaactgcatctgactatgagccgagtctgaaattt
aagagcagaaaacctccgaccaagatgaactccagaaatggaacgaagagcatgggtcag
aggaagaaatcccagaaatgttcctcctctgaggatgaaaataacttttccaaagtggcg
agcggcgggccgcggcggcaggccacggtcaacgtcagctacaaggaggctgatgagatg
aacacagactctgatgatctggtggaggtgctgggtgaagatgttcctttgcctgaggag
gaggagtttgaaaccattgagagagtgatggaaagcaggctgggaagaaaacgagctaca
ggcagtgctaccaccgtgtacgccgtagaggccgacggagaccccaacgccaactttgat
cccagcaaggaggccggcgaggtccagtatctgatcaagtggaagaactgggcgcacatc
cacaacacctgggagactgaagaaacactaaagctccagaatgtgaggggcatgaagaag
ctggagaacttcaagaagaaggagcaggagaagaggaaatggttaaaggcagcatcgcca
gaagacagagaatatttcaactgtcaggaggagctgatggacgacctgcactctcagtac
cggctggtggagcggatcctaggacactccaaccagaagtcagctgccggttacccagac
tacctctgcaagtggcagggcttaccgtactctgagtgcagctgggaggacggcgccctg
atcgccaaaaagttccagaaatgcatcgacgactacatgagcaggaaccagtccaagacc
atcccctccagagacttcaagctgatgaagcagaggccgcggttcgtagcgatgaagaag
cagccagcttacatcggaggagaaggcctggagctcagagactaccagctggatgggttg
aactggatggcccactcctggagcaaaggcaacagctgcatcctggctgatgagatgggc
ctagggaagaccatccagaccatctccttcctaaactacctgttccatgagcaccagctc
tacgggcccttcctcctggtggtgccgctgtccactctgacctcctggcagagggagatc
ctgctctgggctccaaagatgaatgttgttgtttacctcggcgacatcagcagcaggaac
atgatccgaacacatgagtggatgcacgtccacaacaagaggctgaaattcaacatcctc
ctcacaacatatgaaattcttctaaaagacaagtccttcttaggcggcgttaactgggcc
ttcatcggggtggatgaagctcacaggctgaagaacgacgactctcttctctacaaaacc
atgatcgactttaagtccagccacaggctgctgatcacaggaacgcctctgcagaactcg
ctcaaagagctctggtccctgctgcacttcatcatgcctgaaaagtttcactcctgggag
atgtttgaggaggagcatggcaaaggacgagactctggatacaccagcctccacaaagag
ctggagcccttcttgctgcgccgcgtcaagaaggatgtggagaagtctctgccagctaaa
gtggagcagatcctccgggtggagatgagcgccatccagaagcagtactacaagtggatt
ctgaccaggaactacaaggctctgagcaaaggcaccaaaggcagcacgtctggcttcctg
aacatcatgatggagctgaagaagtgctgcaatcactgttacctcatcaaacctcccgat
gacaatgaagctctcaacaaaactgaagcgttacagcaactaatccgcagcagcgggaag
ctggtgcttctggacaaactgctggttcgtctgaaggagcgaggccacagagtcctcatc
ttctcccagatggtccggatgctggacattctggctgactatctgaagagcaagaatttc
tacttccagcgattagacggctccatcaaaggagagatgcggaagcaagctctggatcat
tttaacgccgagggttcagaggacttctgcttcctgttatctacacgtgccggtggactg
ggtatcaatctagcatcggctgatacagtggtgatctttgactctgattggaacccacag
aatgacctgcaagctcaggccagagcccaccggattggtcagaagagacaggtaaatatc
tatcggctggtgacaaaaagctcagtggaagaagatatcattgagagggccaaaaagaaa
atggtgttagaccacctggtcattcaaaggatggacaccaccggaaaaactgtccttcat
acgggagctgcaccctcaagctctgcaccgttcagcaaagaggaactgtcggccatcctg
aagtttggagctgaagagctgttcaaagagccagaaggtgaagagcaggaacctcaggag
atggacatcgatgagatcctgaaaagagcagagaccagggagaacgatccgggaccgtcc
accgtaggagaggagctgctgtctcagttcaaggtcgccaacttctccatgatggatgat
gaagacctggatatcgactctgagcgaagtcagcggagctgggatgacatcatacccgaa
gaacagaggaggaggatggaggaggaggagagacagaaggagctggaagagatttacatg
ctaccacgcatgaggaactgtgccaagcagataagcttcaactctgacagacggcagagc
aggaacaggagatattcaggctcggacagcgactccaactcagaccgaaagagaccaaag
aaacgcgggcgaccccggaccattccacgggaaaacatcaaaggttttacagacgcagag
atccgcaggtttgtgaagagttacaagaagtttggaggccctctggaaaggctggacgcc
atcgcccgcgatgctgagctggtggataaatcggaacatgacctgaaacgcctggcagag
actgtccataacggatgtctgaggacactacgtgaaaacccctgtggtccagaaaaggcg
tcagcaggaagacgaggaaaagttaaaggtccgacgttccggatctctggggtccaggtg
aacgccaagctggtcatctcccatgaagaggaactggctcctcttcataaggccatcccc
gccgaccctgaggagagaaagaagtacatgatcccgtgtcactccaaggcggcgcacttt
gacatcgactgggggaaggaggacgactccagtctgctgattgggatctatgaatacggt
tacggcagctgggagatgatcaagatggaccccgacctcaacctcacacacaagctgtta
ccagatgatcctgacaagaagccgcaggccaaacagctccaagccagagccgactacctc
atcaagctactgagcaaggacctggccaagaaggaggcccagaagcaggctggagcggct
aactcacgcaagaggaaacccaggaggaaactcagcaaagctcagaaatcaggaaagggc
gaggaagccatgaagagcccgtcttcagacctgacgtcagacaagaggtccgaggatgag
aacgagtttgacctggaaaagaagatggcaggaaaggctgcgagcaaacgcagtcaggga
gaggaggaggaggagcatcagcacgacgcttcctcatcagaagagaaggatgacaaagag
agggaggagaagaaggagaaggctgacggctgtgacctgaaggacaggagagaaatgaag
ctttttgatcccgttcagaaacaggaggacgacgaagagaagatcgaagtaaagactgag
gtacgagatcggaccaagaaggcgtccagcgctcccagcgctgcggagagcctgtctgtg
tgcgaggaggccgaggagctggaccagaggaccttcagcgtgtgtaaggagaggatgcgg
ccggtaaaagcggccttgaagcagctggaccgaccggagaaaggcctgtcggagcgcgag
cagctggagcacaccaggcagtgcctgataaagattggagaccacatcacccaatgtctg
aaggagtactctcaccccgaccacatcaagcagtggagaaagaacctctggatctttgtc
tccaagttcacagagtttgatgcaagaaaactccacaaactctacaaacacgccatcaag
aagagacacgagaacgtccaggccgtggagcagaacactagaagcgctcaaagctacaag
catgcagatgttgaacggctgaaggacagcgtccaccaggacgacagcagcagagacagc
tacagctctgagcgccatccgccgtccggacgccaccatcaccaccaccatgacggcggc
agagagtcccacaggaagggcggcggagaatccaggaagagagcctactcctccttcagc
aacgggaaggaccaccgtgaccactacagaggcgacagatacgacggtaaacacaggaag
ctggaagagcagcggagcagcagggaacaccggccagacgggaaggaagactatcgctct
gcctaccactaccactcagactggctgagcgatcagcgaggcgccgccgccgttcgctct
cctcgagacgaacgctctccctgtgactctcccttcgactactcctcagaccataagagc
acgccggagcagatgtggagcagcaggaagacatag
DBGET
integrated database retrieval system
