Cyprinodon tularosa (White Sands pupfish): 119778032
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Entry
119778032 CDS
T07496
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119778032 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119778032 (skiv2l)
Enzymes [BR:
ctul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119778032 (skiv2l)
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119778032 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
119778032 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
Motif
Other DBs
NCBI-GeneID:
119778032
NCBI-ProteinID:
XP_038132994
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MDRIHVPPLGPVDLPLSLLEMGCSGRCELITHPLPGQPLVPQSTLPHGLPPTNLSIEREV
EKQFLQDPAWLPIHDTDFAFQKFLKVTERKVDVDSLLSSNPSPLHSGLSVVRDPTTGMLL
DFTEVLLENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLDQIKTRSEQE
EEIDFENNLLKVPPGLKAGMDFTEKGATITKSEVNLMSLLSTLEDIPDLQAEAEQKEDSK
AGEETIKLARTNSLEDLGIKDIESSPSPKEAGKEDKSKPKENLEEKKKWAIPVDISSPCE
DFYKRIPNPAFKWPFELDTFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIGRIKKRH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLVDAAGNFLTKGYYTAVDTKKERTSKHAQ
SFGTKSIPQNTSASQDRAVWLTLLHFLSQRQQTPVVAFTFSRTRCDENARSLDSMDLTTS
IEKAEIHSFFQKSLSHLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKEVIEMLFSKG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKSGVHDMADLHAMMMGKPTTLHSQFRLTYTMILNLLRVEALRVTDMMRRSFSESH
RDTQAHEKRISQLKQMLASLPPQETEGQLSDILPYYHTVTELQNTREALQQAILESVNGL
KALSVGRVVIVNNKQHLNALGVILQVSNDAVNRTFTALIICEKGNEEGDGKGEDNASFPH
LYNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYNKRQQPRFRNDPPGQA
ISTATQELLRLAEANPSGMATLDPVNDLQLKSVDVVEGSMRLRALQDSLRDFNCVHSPTF
AEQFARIKERMSVQEELDRLLFLVSDQSLTLLPEYHQRIQVLQSLQYIDSSGAVQLKGRV
ACQISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQNTQMEPHITNTLKEGIDRVLS
VAQRIGQLQRECGIVQTAEEFVGQFKFGLTEVVYCWARGMPFAEIALLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggacagaatacatgtcccccctttgggtcccgtggacctgccgctgtccctgctggag
atgggatgctcaggcagatgtgagctgataacacacccgctccctggtcagccactggtc
ccccagagcacgcttcctcatgggcttcctcccaccaacctgagcatagagagagaagtg
gagaaacagtttttgcaagacccagcctggctgcccatccatgacacagactttgccttt
cagaagtttctcaaagtgactgaaaggaaggttgatgtcgactccttacttagcagcaat
ccatctccacttcactctgggctctcagtggtcagagatccgaccacagggatgctgctg
gacttcacagaggttttattagaaaacactggtctgtcagccaaaaactcactgtcacta
cagcgtcagcctggacctccatcagaaagccttcggggaagcaacactaactatcccttc
cttcctggagggatggaggagctcactctggaccaaatcaagacaagatctgagcaggag
gaggaaattgactttgagaacaatttactgaaagtccctcctggactcaaagctggcatg
gattttactgaaaaaggagccaccataacaaaatcagaggtgaacctcatgtctctgctg
tccacgctggaggacattcctgatctccaggcagaagcagagcagaaagaggatagcaaa
gcaggagaagagaccatcaaattagcaaggaccaacagtctggaagatctgggcattaag
gatatagagtcctccccttctcccaaagaggcaggaaaagaggacaaatcgaaaccaaaa
gagaacctggaggaaaaaaagaaatgggccatccctgtggatatatcatcaccctgcgag
gatttctacaaacgcatcccaaacccagcgttcaagtggccctttgagttggatactttc
cagaaacaggctgtgctgaggctggaggcccacgactctgtgtttgtagccgctcacacg
tcagcaggcaaaacggttgtagcagagtacgccatcgctctgtcccagaaacacatgaca
aggactatctatacatctcccatcaaagctctgtccaaccagaaattcagagactttaaa
aacacttttggggatgtaggactcctgacgggagatgtgcagctcagtcctgagtcttcc
tgtctcatcatgactacagagatcctcaggtcgatgctctacaacggctcagaggtcatc
agagacttggagtgggtgatcttcgatgaggtccactatattaatgatgctgagagaggg
gtggtttgggaggaagtactgatcatgcttcctgatcacgtcagcatcattctgcttagt
gccacggtccccaatgctgtggaattcagcgagtggatcggtcgtattaagaagaggcat
atttatgtgatcagcacaatgaagcgccccgttcccttggagcattatctgtacactggg
aacagcacaaaaactcaaaaggagatgttcctgctggtagatgctgcaggaaacttcctc
actaaaggctactacacagctgtcgatacaaagaaggagcgaactagcaaacacgctcag
tcgtttggcaccaagagcatccctcagaacacctcagccagccaggaccgagcggtgtgg
ctcaccctgctacacttcctgtcacagcggcagcagaccccagtggtggccttcaccttc
tctcggacacgatgcgatgagaacgcacgctctcttgactccatggacctcactacctcc
atagagaaggccgagatccactccttctttcagaagagcctgagtcaccttcgaggtgga
gacaggcagctgccgcagatcttgctcatgcgagaccttttgaagaggggcatcgccgtc
caccatagcgggatcctgccaatcctgaaggaggtcatcgagatgcttttctccaagggc
ctcgtaaaggtgctgtttgccacggagacatttgcaatgggagtgaacatgcctgccagg
accgtggtgtttgacagcattaggaaacacgacggcaccggcttcaggaatctgctgcca
ggtgaatatattcagatggcgggaagagcagggaggagaggcctggacgctacgggcaca
gtgatcattttgtgtaaatcgggtgttcatgatatggctgatctgcacgccatgatgatg
ggaaagccaaccacccttcattcccagttccgactgacctacaccatgatcctaaatctg
ctgcgggtcgaagctctcagagtgaccgacatgatgaggaggagcttctctgagagccac
agagacactcaggcacacgagaagagaatcagtcagctgaagcagatgttggcatctctt
cctcctcaagagacagagggccaactctctgacattttgccttactaccacacagtgacc
gagctgcagaacaccagggaagccctgcagcaagccatcctggagtctgtgaacggactg
aaagctctctctgtcggtcgagttgttattgtcaacaacaagcagcatctcaatgctctt
ggagttattctacaggtgtccaatgacgccgtgaatcgcaccttcactgctctcatcatc
tgtgagaagggaaacgaggaaggggatggaaaaggcgaggacaacgcctctttcccacac
ctctacaacacagctctgtttatacctgaaggcccctgcagccacacggtgcagaagtta
aaacttcaggacatctctgccatcaccgtaaaaacccttaaagtgattcctgacagaatc
atcgataattacaacaagcggcaacaaccgcggttcaggaacgaccctcctggccaggcc
atttccacagcaacacaggagctgttgcgattggccgaggcaaatccgagcggcatggcc
accctggatccagtgaatgacctgcagctaaagagcgtggatgtggtggaggggtccatg
aggctccgtgcgcttcaggacagcctgagggacttcaactgcgtccactcacccaccttc
gcagagcagtttgctcgaattaaggagaggatgagtgtgcaggaggagcttgaccggctg
ctgttcctggtatcggaccagtccctcaccctgctgcctgagtatcaccagaggatccag
gtcctccagtcgctgcagtacatcgacagcagcggggcggtgcagctgaaaggccgagtg
gcctgtcagatcagtagccatgagctgctgctgactgagctgctgttcgagaacgtcctg
agcccactggcgcctgaagagagcgccgccctgttgtcctgcctggtgttcacccagaac
acgcagatggagccgcatatcaccaacacactaaaggagggcatcgatcgtgtgctgtct
gtggcccagcgaatcgggcagctgcagcgcgaatgtgggatagtgcagaccgccgaggag
tttgtaggccagttcaagttcggcttgactgaggtggtgtactgctgggccagaggcatg
ccttttgctgagattgcgctactcacagacgtccaggagggcactgtggtccgctgcatc
cagcgcctggatgaggtgctaaaggaggtgcgacaagccgcccgcatcgtgggagactcc
gtcctggggagcaagatggagagggcctcgttggccatccgcagggacatcgtcttcact
gcctccctctacactcactga
DBGET
integrated database retrieval system
