Cyprinodon tularosa (White Sands pupfish): 119779496
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Entry
119779496 CDS
T07496
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03015
mRNA surveillance pathway
ctul04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119779496 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
119779496 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctul03021
]
119779496 (sympk)
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119779496 (sympk)
Transcription machinery [BR:
ctul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119779496 (sympk)
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
119779496 (sympk)
U7-dependent histone pre-mRNA processing factors
119779496 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
PDS5
Cohesin_HEAT
AbiJ_NTD3
Cnd1
Motif
Other DBs
NCBI-GeneID:
119779496
NCBI-ProteinID:
XP_038135078
LinkDB
All DBs
Position
Unknown
AA seq
1211 aa
AA seq
DB search
MMEGAAPTLIDSSTSERVVELLNQAALMSSDEKLNVLKQVQELIINKDPSLLDNFLDEII
AFQTDRSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLLRDDSVNVVKKAVLSLTQLYR
VTLQWLVRSKTVSEMQEACWDLVTQMSGEVLTMLDSENDGIRTHAIKFTESLIITLSPRT
PESDVPKRQEGDISLDKVPRDHSYIRYDTLCEEGKSALEKLLKFMVHPAISSINLTTALG
SLATIARQRPMFMCEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHPCSLEFQ
VQISTLLLDLGMPQSEITRYTPAPREQRKRPRYEQSTDGKKVKMEPALIEDDEDKEEPAP
LAAPKPAAVPAPHSAIDLTAEFLRPLLTPDNVANLVLISMVYLPDVMPASFQATYTPVES
AGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREEEADKEEQTEDGSAAKDVLIKRKLSS
VVLGQAISVVGGYPEKPPPSEAPAAKRLPEPILPSAQTKSTGTVGRKKVFRLADVVQPLS
DSQIGLLSSKAVKRILQSEKAITQSGMSHVRVKLLSRLVTQFEGVMKEDVLEYVLEDVRT
RSELAFSLLYQEYNTYLSQLPAGLLDSYDHCLYTLLSGLQEKPEQRDGLFTKLVLEAPII
TESALDVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEKVRSTALS
FLKRMYEKDHLRDYIEKFALNYLQLLVHPNPPSLLFGADKDTEVAAPWTEDTVRQCLFLY
LSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCPKGAET
LVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKSEVIQALPKLIKLN
PIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSNKCDMKSIIKATNLCFAEKN
VYTSEVLAVVMQQLMEHSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQVWKYPKV
WEGFVKCCQRTKPQSYSVLLQLPPPQLSAVFERCPEMRTPLLQHVLSFTPHQQAHIPTSI
MAVLEAHKKPEPKAAEAVLGQESEPAPNPETPVMEPGEPDPRHQQEAVLLKEEEEPMEQE
EAEPTSLDGTLDSVSQDDLTKDVEEPTPAPEPAEEPMEEPQPEPLDQPESPRDPEPIEAA
PGAGSGSEEVD
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgatggagggggcggcccctactctgatcgacagcagcaccagtgagagggttgtggag
cttctgaatcaggcggcgctgatgtcatcagatgagaagctgaacgttctcaaacaggtt
caggagctgatcatcaacaaagacccgtctctgctcgacaactttctggacgagatcatc
gccttccagacggaccgctccatcgaagtgaggaagtttgtgatcggattcatagaggag
gcgtgtaagcgggacaacgaactcctcctcaggctcatcgccaacctcaacatgctgctg
agggacgacagcgtcaacgtggtgaagaaggccgtcctctccctcacccagctctacagg
gtgaccctgcagtggctggtccgctctaaaacggtgtcggagatgcaggaggcgtgctgg
gatctggtcacacagatgagcggggaggttctgaccatgctggactcagagaacgatggc
atccggacccacgccatcaagttcacagaatctctgatcattacgctgtcgccacggaca
ccagagtccgacgtccctaagaggcaggaaggagacatcagcctggacaaagtccccaga
gaccactcctacattcgctatgacacgctgtgtgaggaggggaagagcgccctggagaag
ctgctgaagttcatggtccatcctgccatttccagcatcaacctgaccacggcgctgggc
tctctggccaccatcgcccggcagagacccatgttcatgtgtgaggtggtgcaggcctac
gagacgctgcatgccaacctccctccgactctggccaagtctcaggtgagcagcgttcgg
aagaacctgaagctgcacctggtggcggtcctgaagcacccctgcagcctggagttccag
gtccagatcagcaccctgctgctggatctgggaatgccgcagagcgaaataacccgttac
acaccggcaccgcgggagcagcgcaaaaggcctcgctacgagcagtccactgacgggaag
aaggtcaagatggaaccagctctcattgaggacgacgaagacaaagaggaaccggcccca
ctcgcggccccgaagccagccgcggttccagctccacattcagccatcgacctcacggca
gagttcttacgcccgctgctaacgcccgacaacgtagccaacctggtgctcatcagcatg
gtgtacctgccggacgtcatgccagcctccttccaggccacttacacgcctgtggagtcg
gccggcactgacgcccagatcaaacatctggccagactgatggcgacgcagatgacggcg
gcaggaatcggcccaggtctggaacagtgcaaggcccgggaggaggaggcggataaagag
gagcagacggaggacggttctgctgccaaagacgttctgatcaaacgcaaactgtcctcg
gttgttctgggccaggccatctccgtggtgggaggttacccagagaagcctcctccctct
gaagctcctgcagccaagaggctccctgagcccatcctcccctcggcacagaccaagagc
accggtaccgtcgggaggaagaaggtgttccgactcgccgacgtggtccagcctttgtcg
gactcccagatcgggcttttgtcgtccaaagcggtgaagcggatcctccagtcggagaag
gccatcacgcagagcgggatgtcccacgtccgggtgaagctcctctccaggctggtgacc
cagttcgagggcgtgatgaaggaggatgtcctggagtacgttctggaggacgtccggacc
aggagcgagctggccttctccctgctctaccaggagtacaacacctacctgagccagctg
cccgccggcctgctggacagctacgaccactgcctctacacgctgctgtcgggtctgcag
gagaagcccgagcagagggacggactcttcactaagctggtcctggaggcgcccatcatc
accgagtcggcgctggacgtgattcggcggtactgcgaggacgagtcgcgggtctatctg
gggatgacgacgctgaaggagctcatcgtgaagaggccgtccagacagttccagtacctc
catgttcttctggacctgagctcacatgagaaggagaaggtccgcagcaccgccctgtcc
ttcctgaagcggatgtatgagaaggaccacctgagggactacattgagaagtttgccctg
aactacctgcagctcctcgttcacccaaacccgccgtctctgctgtttggagccgacaaa
gacacagaggtggcggctccgtggacggaggacacggtgagacagtgtctcttcctctac
ctgtccctgctccctctgaaccaccggctggtccacgagctggcgtccgtctacaccgag
gccatcgcagacatcaagcgcagcgtcctccgcgccatcgagcagcccatccgaggaatg
ggcatgaactctcctgagctgctgctcctggtggagaactgccccaaaggagccgagact
ctggtgacccgctgtctgcacattctgaccgacaaagtgcctccgtctccggagctggtg
gagcgggtcagagacctctaccataaacgggttcctgacgtgcgtttcctgatcccggtc
atcaacgggctggagaagagtgaagtgatccaggctctgcctaaactcatcaagctgaac
cccatcgtggtgaaggaggtcttcaacagactgctgggaactcagcacagtgagggaagc
tcctcggtttctcctctgactccaggagacctgctcattgctctgcacaacatcgactcc
aacaagtgtgacatgaagtccatcatcaaagccaccaacctgtgctttgctgagaagaac
gtctacacctcggaggttctggccgtggtgatgcagcagctgatggagcacagtccgctc
cccatgctgctcatgcgcaccgtcatccagtccctcaccatgtacccccgcctgggcggc
ttcgtcatgaacatcctgtcccgcctcatcgtcaagcaggtgtggaagtatcccaaagtg
tgggagggcttcgtgaagtgctgccagaggaccaagcctcagtcctacagcgtgttgctg
cagctgccgccgccgcagctgagcgccgtcttcgagcgttgccccgagatgaggacgccg
ctcctgcagcacgtcctgtccttcacgccgcatcagcaagctcacatcccgacctccatc
atggcggttctggaagcccataagaaaccagaacccaaggcggcggaggccgtcctgggg
caggagtcggaaccggctccaaatccagaaactcctgtcatggagcccggcgagccggat
cctcgccatcagcaggaagcggttcttctaaaggaggaagaggaacccatggagcaggaa
gaggcggagccaacgagcctggatggaactctggactctgtttcccaggacgatctgacc
aaggatgtggaggaacccacaccggctccagaaccagctgaggaacccatggaggagcct
cagccagaaccgttggatcagccggagtctcccagagatccagaacccatcgaggctgcg
cctggagctggaagtgggtcggaggaagtggactaa
DBGET
integrated database retrieval system
