Cyprinodon tularosa (White Sands pupfish): 119779527
Help
Entry
119779527 CDS
T07496
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03030
DNA replication
ctul03410
Base excision repair
ctul03420
Nucleotide excision repair
ctul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119779527 (lig1)
03410 Base excision repair
119779527 (lig1)
03420 Nucleotide excision repair
119779527 (lig1)
03430 Mismatch repair
119779527 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctul03032
]
119779527 (lig1)
03400 DNA repair and recombination proteins [BR:
ctul03400
]
119779527 (lig1)
Enzymes [BR:
ctul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119779527 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
119779527 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
119779527 (lig1)
DNA replication proteins [BR:
ctul03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
119779527 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
119779527 (lig1)
DNA repair and recombination proteins [BR:
ctul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
119779527 (lig1)
NER (nucleotide excision repair)
Other NER factors
119779527 (lig1)
MMR (mismatch excision repair)
Other MMR factors
119779527 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
119779527
NCBI-ProteinID:
XP_038135135
LinkDB
All DBs
Position
Unknown
AA seq
1004 aa
AA seq
DB search
MQRSIASFFQPKSKVKDVQKKTADEPVNKPVKSPLKVQNGVQEADSPIKKVTKRSRQLLD
SDEDEAPVVKEQGGKGATAKTEKVDDVFKAVPTPLSPTPALSTPVTPATPATPASSASPG
TPSTPSSISPSGIVKRKTARKMFPKRKLDESESGSGSRKGESEVVEEQGQQNKRPRVESS
VSSAGNTDEPMEEGAKEEKVEKTVAEANSLDEEVENKKKDEGEKAKKEEEQVEEKISDDK
EKKAEGAEKKNEAKEKTDDEEGPKEEVVEKDTKDTGSPKSQTEEKKQKQARERKDKEPAK
KTPISSFFAPRKAGIKTEKPEKKEGEKPTSSERKSSEEERKETKGESTSGQTDYDPSRPN
YHPVEHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCVY
LCLNQLGPAYLGMELGVGETVLMKAVAQATGRHLDKIKAEAQEKGDLGLVAESSRSNQRT
MFQPASLTAGGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRI
GLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILKQTYCEMPN
YDVIIPVLLKEGIDELPKHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAKFTCEYKYDGE
RAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDAEAVAWDQEKKQI
QPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRELLRESFTEVEGE
FLFARSIDSHDTKTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDG
VGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFL
KEHILPKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPIYKAAMGMVDAEKGISLRF
PRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcctaagagcaaagttaaggacgtccagaag
aaaactgcagatgaaccagtaaacaagcctgtgaagagccccctgaaggtgcagaatggc
gttcaggaagcagattcgcctatcaagaaggttaccaagcgcagccgtcaactcctggac
agcgacgaggacgaggcgccggttgtaaaagaacaaggcggcaaaggagctactgctaaa
acagagaaggtggacgatgtgtttaaggctgttcccaccccactgtctccgacaccagct
ctatctacgcctgtaaccccagcaaccccagcaactccagcctcctctgcttctccaggg
acgcccagcactcccagttcaatctccccttctggaattgtgaagcgcaaaacagcgagg
aagatgttccccaagaggaagctggatgagagcgagagcggcagcgggagtcggaaaggg
gagtctgaggttgtggaggagcagggtcagcaaaacaaacgaccccgtgtggagagcagt
gtcagtagcgcagggaacaccgatgaacccatggaggagggagcaaaggaagaaaaggtt
gaaaagacagtggctgaggctaacagcctagatgaagaggtggagaacaagaagaaagac
gaaggagagaaggccaagaaggaggaggagcaggtggaagaaaagatctcggatgataaa
gaaaagaaagctgagggggcggaaaagaaaaatgaagcaaaggagaagaccgatgatgag
gaggggcccaaagaggaggtggttgaaaaggacacgaaagacacagggagcccaaaaagt
caaacagaggaaaaaaagcagaaacaggcaagggagcggaaagataaggagccagccaag
aaaaccccaatcagcagtttctttgctcccagaaaagcaggaattaagacagagaaacca
gagaagaaagaaggagagaaacctacaagttcagagaggaagagctctgaggaagaacgg
aaagaaacaaaaggtgaatccacctccggacagacggactatgatccatccagaccaaac
taccatccagtggagcacgcctgctggaagcaaggccaaaaagtgccgtacttggcagtg
gctcgaacctttgagaaaattgaagaggactctggcaggctgagaaacattgagacgctg
tcaaacctgcttcgttcggtgctgctgctctctccagacgacctgctgtgctgcgtgtac
ctgtgtttgaaccagctcggccctgcctacctggggatggagctgggcgtcggggagacg
gtgctgatgaaagccgtcgctcaagcaaccgggcgacatttggacaaaattaaagcggag
gcgcaggagaaaggagatttgggccttgtggccgagagttcccgtagcaaccagcgcacc
atgttccagccagccagtctgacagcaggaggcgtgtttaagaaattgaaggaaattgcc
agtatgagtgggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtg
gcgtgccgcttctctgaggcccgctacatagtcaggtctctggctgggaagctgaggatt
ggccttgctgagcagagtgtcctctccgctcttagccaggctgtctgcttgaccccacct
ggacaaggtttccctcccgctgtgattgacgcagggaaagggatgagtgctgagagcagg
cgggcctggattgaagagaagagcctcattctcaaacaaacttactgcgagatgccaaat
tacgacgtcatcattcccgttttgctgaaagaaggcatcgacgagctgcccaaacactgc
aaactcaccccaggcgtgccgctgaggcccatgttggcgcaccccaccaagggtgtcggc
gaggtgatgaagaagtttgacgaggcaaagttcacctgcgagtacaaatacgacggagag
cgtgcacagattcatattctggagagcggtgaggttcgaattttcagccgcaaccaggaa
gacaacaccagcaaataccccgatatcatctcgcgcatccccaaggtgaagaaggactcc
gtagtgtcctgtgtcctggacgcagaggcggtggcctgggatcaagagaagaagcagatc
caacccttccaagtcctcaccacaaggaagagaaaggacgtggacgcctcagagatcaaa
gtccaagtatgcgtgtatgcctttgacctcctctatctcaacggagagtccctggtgcga
cagccgctgtgccggcgtcgggagctgctcagagagagcttcacagaggtggagggagag
tttctgttcgcccgttccatcgactctcacgacaccaagactatcgccgagttcctggag
caatccgtccgagactcctgcgagggcctgatggtaaagactcttgagaaagatgcaaca
tacgagattgccaagcgttctcataattggctcaagctgaagaaggattacctggacggg
gtgggcgacacggtggacctctgcgtgattggagcttaccttggaaagggaaagcgaaca
ggaacgtacggcggcttcctgctggcctgctatgatgaagacaacgaggagtttcaatca
gtctgcaagatcggaacaggctttaaggatgaagatctggagcagcattacaagttttta
aaggagcacatcctgcccaaaccacggccctactaccgcgtggaccaatccgctgagcct
gacgtatggttagacgcagtgcaggtttgggaagtgaagtgcgccgacttgtcgctgtca
cccatctacaaggctgccatgggaatggtggatgcagagaagggcatttctctgcggttc
cctcgtttccttcggatcagagacgacaagaagcctgaggacgccaccaccggagctcag
attgctgatttgtacaagaagcagcaacagattcagaatcaaggggagaaagctgacccg
gaggactactactga
DBGET
integrated database retrieval system
