Cyprinodon tularosa (White Sands pupfish): 119779922
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Entry
119779922 CDS
T07496
Name
(RefSeq) collagen alpha-1(XIV) chain
KO
K08133
collagen type XIV alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ctul00535
]
119779922
Proteoglycans [BR:
ctul00535
]
Extracellular matrix (ECM) proteoglycans
Others
119779922
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
DUF4959
VWA_3
Fn3_nematode
Pga1
Motif
Other DBs
NCBI-GeneID:
119779922
NCBI-ProteinID:
XP_038135701
LinkDB
All DBs
Position
Unknown
AA seq
1870 aa
AA seq
DB search
MQFSVRLSFFLLGFVLIAVLPDTAKGQVSPPRRFRFKVLGQNKLEVSWKEPKGNFEGYKL
LYTTRPGDQQKVLELAKQETKLVIRDFDSSKEYNFKIVTVNKGKESKALQGNIKAQRSGS
ETAQTQGGKKSDVTRENNEISEAEDGFTCKTPAIADIVILVDGSWSIGRINFRLVRAFLE
KLVNAFSVEFDKTRIGLAQYSGDPRIEWHLNAHTTKEAVIEAVKNLPYKGGNTLTGLALT
FILENSFKAESGSRPGVPKIGILITDGKSQDDVIPPAQSLKDAGIELFAIGVKNADENEL
KAIASPPEETHVYNVADFSVMSDIVEGLTTTVCDRVDQLDKKIKGEGGKAPPVAAVAPPR
DLVTSEITARSFRVTWTHAPGQVEKYRVVYYPASGGLPEEKVVSGTENSVELTYLNSLTE
YQVAVFAVYRSTASEALRGSATTLALPTVNDLDLFDITPSTMRVRWKIAAGASGYMILYA
PLTEQDAADEKEVKVDASVNEVELEGLTPATEYIVTVYAMYGEEASDPMTSQQTTLPLIP
ARNLRFSDVDHSSARITWESPSRLVRGYRIMYVKTSGVQTNEVDVGSVTSYLLRNLTSTT
EYTVGVFAIYKEGEAPAVTESFTTQVVPDPLDLKSSDVSSDGFRVYWQHAASDVVLYRLI
WTPTDGGDSEEVMVNGNTNTYLIKGLEPASEYEVLLAAVYANEVESDEVVLVETTAKRTT
TVATTTTTTLTPRYAVKNLRIDEETTFSMRVSWQAVDSRNVRHYRLTYISARGDRAEETR
TVPSGQTSLVLQPLLSDTEYKVTIIPVYSDGDGPLSSQMGRTLPLSAPKNLRVSEEWYNR
FRISWDVPPSPTMGYRVVYQPLSGTGQALETFVGEDVNTMLILNLLSGTEYSVKVIASYT
TGSSEALTGKARTLYLGVNNLSTYQVRMSSVCAQWGPHRHATSYRLVIQSLTESQKQETK
LGGGASRHCFNNLKPNTEYKISVYSQLQDGTEGPAVTANVKTLPIPTAAPVKPPTTTPPP
TIPAAKEVCKAAKADLVFLVDGSWSIGDENFLKIIRFLYSTVGALDRIGPDGTQVAIAQF
SDDARTEFKLNSYSDKERLLDAINRISYKGGNTKTGRAIQHVKENIFTAEGGVRRGIPNV
LVVLTDGRSQDDVNKVSKEMQMAGYIVFAIGFADADYGELVSIASKPSDRHVFFVDDLDA
FQRIEEKLVTFVCEAATATCPSIPMSGSTMPGFRMMELFGLVENKYNSISGVSMVPGTFN
AFPCFHLHSNALMEQPTRFIHPEGLPSDYTITLLFRVLPDTPKEPFAIWEILNKNNDPQT
GVILDNSGKTLTFFNNDYRGEFQTVTFEGPEIQKLFFGSFHKLHIAISKTSAKVFIDCKM
VTEKSINAAGNISTDGMEVLGRMVGSRQNQDNSAPFQLQNFDIICSTSWASRDKCCELPG
LRKEADCPALPKACTCTQDSKGLPGPPGVPGGAGIRGARGDRGEPGPVGPAGPVGDVGVP
GPQGPPGPQGPSGRSIIGPPGSPGERGQKGEAGQQGQQGVPGRPGAVGREGPPGPRGLPG
KDGPQGRQGPPGNMGTPGAPGAPGNTGAQGKPGTLGPPGPPGSKGEKGERGDLQSTASVQ
DIARQVCEQLIQSHMSRYNSILNQAPSQPVSIRTVPGPPGEPGRVGPPGPPGEQGPAGRP
GFPGQNGQNGNPGERGQPGEKGEKGSPGVGVQGPRGPPGPPGPQGQGRTGNQGATGRPGN
PGAPGRSGVPGPVGPPGPPGYCDPNSCVGYNVGEGEETTDIRGIPSVQLPSSVFQNYGEV
EEDDPYRYYQPNYPAPQPVAPDDPALAFEDAEPSSPDVYRSTRSIKVEKEQDGSKRRIKR
GMKNLPGLTN
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctcagtcagactgagtttcttcctgctgggctttgttctcatcgccgtgtta
cctgacacagcaaaaggccaggtctcaccaccacggagatttcgtttcaaagttttggga
cagaacaagctcgaggtatcatggaaagaaccaaaaggaaattttgaaggctacaagctc
ctttacaccacacgtccaggtgatcaacagaaggtgttggaattagcaaagcaggagaca
aagcttgtcatcagagattttgactcctcaaaggagtacaactttaagattgtcactgtt
aacaaggggaaggagagtaaagctctacaaggaaacattaaagctcagcgatcaggctct
gaaacagctcagactcaaggggggaaaaaaagtgatgtaacacgagaaaacaacgagatc
tcagaagctgaagatggattcacgtgcaagacccctgccattgccgacatcgtgattctg
gtggacggctcctggagtatcggtcgcattaacttcaggctggttcgagcctttctggaa
aagcttgttaatgcgttctctgtggaatttgacaagacaaggattggactggctcagtac
agtggagaccccaggatcgagtggcatctgaatgctcacactaccaaggaggctgtaata
gaggctgtgaaaaacctgccctataaaggaggaaacacactgacaggtctggctcttacc
tttatcttggaaaacagttttaaagcagaatcaggctcccggcctggtgttccaaaaata
ggaatcctgatcactgatgggaaatcccaagacgacgttattcctcctgcgcaaagcctg
aaggatgctgggatagaactgtttgctatcggtgtgaaaaacgcagatgaaaacgagctg
aaggccattgcctcccctcccgaggagactcatgtttacaacgtggcagacttcagcgtg
atgagtgacatcgtggaaggtctcaccacgacggtttgtgaccgcgtggatcagctcgac
aaaaaaataaaaggggaaggaggcaaagctccacccgttgctgccgttgcgccccctcgt
gatcttgtgacatcagagataacggctcgcagttttcgagtgacatggactcatgcaccg
ggtcaagtggagaaatatcgagtggtttactatccagccagtggaggtctgccagaagaa
aaggtggtctctgggacagagaacagcgtggagctgacctatctgaactccctcacagag
taccaggtggccgtttttgccgtctaccgcagcactgccagtgaggccctgagaggaagt
gccacaacattggcgctgcccacagtgaacgacctggatttgttcgatattactcccagc
accatgagggttcgctggaagatcgctgctggggcctcaggttacatgatcctatatgct
cccctgactgagcaggacgctgcagatgagaaggaggttaaggtggacgcttctgtaaat
gaggtggagctggaagggttaactccagccactgaatacattgtgacagtttacgccatg
tatggagaggaggcaagtgatcccatgaccagtcagcagaccacattaccactgatcccg
gcaaggaatcttcgtttttcggacgtggaccacagctctgctcgcattacatgggaatcc
ccttccaggttggtccgaggttaccgcatcatgtacgtcaagaccagtggagtccaaact
aatgaggtggatgttggttctgtgacgagctacttgctccgaaacctgacctccacgact
gagtacacggtcggggtttttgcaatctacaaagagggcgaagctccagctgtgaccgaa
agcttcaccacacaggtggtcccggatccgctggatctgaagagcagcgatgtttcctca
gatggcttcagggtatattggcaacacgcggcctctgatgtggtgctctatcgactcatc
tggaccccaaccgatgggggagacagtgaggaggttatggtgaatgggaacactaacact
tatctgattaaaggactagagcctgcttcagagtatgaagtcctcctggctgctgtctac
gccaatgaggttgaaagtgatgaggtggtgctggtagaaaccactgctaagaggacaact
acagttgctacgacaaccacaacgacattaactcctcgttatgcggtaaagaatctgagg
atcgatgaagaaaccacatttagcatgcgggtgtcgtggcaggctgtcgactccaggaat
gtccgtcattatcgattgacctacattagtgccaggggagatcgagcagaggagacgagg
acggtgccctcgggtcaaaccagcctggttctgcagcctctcctttcagatacagagtac
aaagtcaccatcatccctgtttattctgatggagatggcccactatcctcccaaatggga
cggacacttcctctttctgctcctaagaacctgcgagtctcagaagaatggtacaaccgc
ttcaggatcagctgggacgttccaccttcccccactatggggtacagagtcgtctaccag
cctctttctggcactggacaagctctggagacctttgtgggagaggatgtaaacaccatg
cttattctcaacctattgagtgggacagagtacagtgtcaaggtcatagcgtcctacacc
acaggatccagcgaggctctcacaggaaaggcccggaccttgtacctgggagtgaacaat
ctgagcacatatcaagtgaggatgagtagtgtttgtgctcagtgggggcctcatcgacat
gccacttcctacagactagttattcagtctttgactgaaagtcagaaacaggagacgaag
ctcggtggaggagccagcagacactgctttaacaacctgaagcccaacactgagtataag
atcagcgtctactctcagctacaggatgggaccgaaggacctgcagtcacagcaaatgtg
aaaacattaccgatcccaacagcagcaccagtcaagcccccaaccaccaccccaccacct
acaattcctgctgctaaggaagtttgcaaggcagccaaagcagacctggtctttttagtc
gatggttcctggagtatcggcgatgagaacttcctgaagatcatccgtttcctgtacagc
accgttggagctcttgaccgcatcggcccagacggcacacaggttgctatagcccagttc
agtgatgacgctcggactgagttcaagttgaactcctacagtgacaaagagcgtctgctt
gatgccatcaacaggatctcctacaaaggaggaaacactaaaacaggtcgagccatccag
catgtgaaggaaaacatcttcactgctgagggaggagtgagaagagggatccccaacgtc
cttgtggttcttaccgacggtcgatcacaggatgatgtcaataaagtttccaaagagatg
cagatggcaggttacatcgtatttgctatcggcttcgctgacgctgactacggagagctg
gtgagcatagccagtaaaccgagcgacaggcacgtcttctttgtcgacgacctggatgcc
tttcagaggatcgaggagaagctggtgacctttgtctgcgaggcggccaccgcaacttgt
ccttcaataccaatgagtggcagcacaatgccaggtttccgtatgatggagctgtttgga
ctggttgaaaacaagtacaacagcatctctggtgtttctatggttcctggcaccttcaat
gcattcccctgtttccatctgcacagcaacgctctgatggaacagccaaccaggtttatc
catcctgaggggcttccctctgactacaccataaccctgctgtttagagttctgcccgat
accccaaaggagccctttgcaatctgggagatcttaaataagaacaacgatccgcaaact
ggggtcatcctggacaattcagggaaaactctgacattcttcaacaatgactacagaggg
gaatttcagactgttacatttgaaggtccagagatccagaaactcttcttcgggagcttc
cacaagctgcacattgcaatcagcaagacgagcgccaaggtgttcatcgactgcaaaatg
gtgacagagaagtcgatcaacgctgcaggaaacatcagcacagatgggatggaagttctg
ggcaggatggttggctctcgacagaaccaggacaactctgcaccgttccagctccagaac
tttgacattatttgcagcacatcatgggcctccagagacaagtgctgcgaacttcctggt
ctgaggaaggaagcagactgcccggccttgcccaaagcctgcacctgcacacaagatagc
aaaggtctacctggtcctcccggagtaccagggggggctgggatcagaggggccagaggg
gatcgaggagagccaggcccggtggggcctgcaggtcctgttggagatgtaggtgtaccc
ggacctcaaggaccccctggacctcaaggaccaagcggtcgctccatcatcggaccccca
ggatccccaggagagcgagggcagaaaggagaagcaggtcaacaaggacaacagggagtt
cctggaagacctggagctgttggaagagaaggacctccaggacccagaggacttccaggc
aaagacggcccacagggcagacaaggacccccaggaaacatggggactccaggagctccg
ggagcccctggaaacacaggcgcccaaggaaaaccgggaacgctgggaccaccgggtcct
ccaggaagcaagggagagaaaggtgaacggggtgacctccaatcaacagcgtcggttcag
gacatcgccagacaagtctgtgagcagctgatccaaagtcatatgtctcgttacaactct
atcctgaaccaagctcccagccagcccgtgtccatccgcacagtccctggacctccaggg
gaaccgggtcgggtaggtccgccagggcctccaggagaacagggaccagcaggaagaccg
ggctttcctggacagaatggccagaatggaaacccgggagaaagagggcaaccaggagaa
aagggggagaagggatctccaggggttggtgtgcaaggccccagaggacctccaggacct
cctggaccccaaggtcagggccgaactggcaaccagggtgcaacagggcgccctgggaat
cctggagctcctggtcggtctggagttcctggaccagttgggcctccagggcccccagga
tactgtgaccccaactcttgcgtgggctacaatgttggagaaggtgaagaaaccactgac
atccgcggtatcccctcagtccaactcccatctagcgtcttccaaaactacggagaggtg
gaagaggacgacccgtaccgctactaccagcccaactaccccgctccccaacccgtggct
cccgatgaccccgctctggcgttcgaagatgccgagcccagttcccccgacgtgtaccgt
agcacacggagcataaaggtggaaaaggagcaagatggatccaagagaagaataaagaga
ggaatgaagaatcttcctggactaactaactga
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integrated database retrieval system
