Cyprinodon tularosa (White Sands pupfish): 119780199
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Entry
119780199 CDS
T07496
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119780199 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctul03400
]
119780199 (msh6)
DNA repair and recombination proteins [BR:
ctul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119780199 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Metal_resist
Motif
Other DBs
NCBI-GeneID:
119780199
NCBI-ProteinID:
XP_038136062
LinkDB
All DBs
Position
Unknown
AA seq
1376 aa
AA seq
DB search
MAKQSSLFNFFTKSPPPVSKAKPTPSPAEADSVEKSNSSPKEEARQNQNQQQQQPSRNSR
VKQNSGSKSASGGFKKLFGDKAAKPEESLKCPFAAGALVWAKLEGHPWWPCMVVPQPLTG
QQMRGRGRAQRIHVHFFDEPPTRGWVSTKYIREYQGSDSSDVKPGGVFFSSKPVIRRAME
LADQFMFDSPEKRLKMPLCTDPSDEEEDEEEMELDKSTVTDEEVSDTEEQKSEEVKTPKV
RRDLSRASKEQSSKAKRRRIVVASDSDGSDEEFKPEHAASSSEEEEEEATVSSEEERRSS
QESEPDSPIKPVKRKRPAEKSVSKKAKAPATPSAAPKRAPTVITADTKSRLSAFSAPDSF
ESQTNGSGATGGATVWDHEKLEWLQDGKRKDGKRCRQSEEDYDPTTLYVPEDFLNRNTPG
MRRWWQLKSGMFDTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIGFARF
SDVLVQKGYKVARVEQTETPEMMEARCKTMAKPTKYDRVVRREVCRIITRGTQTYSVLDG
APSESQSKFLLSLKEKAEDESSGRHRTYGVCFADTSVGYFHIGQFADDRHCSRLRTLIAH
FPPAEVLFEKGNLSAETRKILKASLSSALQEGLNAGTQFWDAQKTLKNLSEENYFDEVAG
EESKCFLPALLKRMTSESDSLCLTPKEGYELALSALGGCIFYLKKCLVDKELLSLANFEE
YVPVDVELEKAAGPASFFSQTRQRMVLDGVTLANLEIFQNGSGGTEGTLLERLDTCSTPF
GKRLLKQWLCAPLCNPASIRDRLDAVEDLMGAQAQATEVSEMLKKLPDLERLLSKIHSIG
TPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQDIISAFAPVLGDFRSTLLHQ
IISVKTEENGLFPDLSAELKRWETAFDHQKARTTGVITPKAGFDPEYDQALTGIKNCERD
LQDYLERQKKRLGCKNMAYWGTGRNRFQMEVPDSVSERNIPEEYEVKSTKKGWKRYVTKE
SERLFSELQGFEEKRDAALKDCMRRLFYNFDKNYKDWKTGAECMAVLDVLLALSCYSLGG
DGPMTRPQVVLPEEDGRSAPFINLTGSRHPCVTKTFFGDDFIPNDIFIGCSGNGDGDGLE
GCASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLCFTPVDRVFTRLGASDRIM
AGESTFYVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAEKICCRTL
FSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFISGACPKSYGFNAAR
LANLPEEVIQSGHRKAREFEKSTISLRLFRKLCQFAEDASQDKTRFTSLLQLLNTL
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagttcactcttcaactttttcaccaagtctccaccaccggtctctaag
gcaaagccgacgccttccccggccgaggcggactccgtggagaagtccaactcttctcct
aaagaagaagccagacagaatcagaaccagcagcagcagcagccgagcagaaacagcaga
gtgaaacagaacagtggctccaagtcggcaagcggaggatttaagaaactgttcggagac
aaggccgctaaaccggaggagagcctaaaatgcccgtttgctgctggagccctagtgtgg
gccaaactggaaggacacccctggtggccatgcatggtggttcctcaacccctgactggc
cagcaaatgaggggccggggtcgagctcagcgcatacacgttcatttctttgatgaacct
ccaaccagaggatgggttagcaccaaatacattcgagagtaccaagggtccgacagcagc
gacgttaaacctgggggggtgttcttcagtagcaagcctgtgattcgtcgcgccatggag
cttgctgatcaatttatgttcgacagtcctgaaaaaagattgaagatgccgctctgcaca
gatccatctgatgaggaagaggatgaagaagaaatggagcttgacaagtcaacagtaact
gatgaagaggtcagtgacacagaagaacagaaaagcgaggaagtgaagacacccaaagtg
cgccgggatttgtcacgtgcttccaaagagcaatcaagcaaagccaagcgccggcgcatt
gttgtggcctcagacagcgacggatcagacgaagagttcaaaccagagcatgctgcatct
agcagcgaggaagaggaggaagaggccaccgtgagtagtgaagaggagaggaggagcagt
caggagtccgaaccagacagccccattaagcccgtgaagcgcaaacgtcctgcagagaag
tccgtcagtaagaaagcaaaggcgcctgctacaccctctgctgctcctaaacgagctccg
actgtgatcacggcagacaccaagtcccgcttgtcagccttctcagctcctgacagcttt
gagagccagactaatggatcgggggccacaggaggcgcaacagtctgggatcacgagaag
ctggagtggctgcaggatggtaaaaggaaagatggtaaaagatgtcgtcagagtgaggag
gactatgatcccaccaccctgtatgtgcctgaagactttctaaacagaaacactcctggt
atgcgtcgctggtggcagctaaaatcggggatgtttgacactgtgattttctacaaggtg
gggaagttttatgagctgtaccacatggatgcggtgatcggagtcaacgagctgggtctg
acattcatgaaaggaacctgggcgcactctggcttcccggaaattggctttgcacgtttc
tccgacgtgttggtgcagaaaggctataaggtggctcgcgtggagcagacggagacccct
gagatgatggaggcacgctgcaaaactatggccaagcccaccaaatatgaccgtgtggtc
agaagagaagtgtgccggattatcacacgtggaacccagacctacagcgtgttggacggc
gctccatcggagagccagagcaagttccttttgagtttgaaggaaaaggccgaagatgag
agctctggtcgacatcgcacctacggcgtttgctttgcagacacgtcagtgggatatttc
catatcggtcagtttgcagacgatcgccactgctcccggctgcgcaccttgattgcacac
tttcctcctgctgaagttctctttgaaaaaggcaacctgtctgccgaaacccgcaaaata
ctcaaggcatctctgtcctctgctctgcaggaaggactgaatgcaggaacccagttttgg
gacgctcagaagactcttaaaaacctctctgaggagaattatttcgacgaggtagctgga
gaagaatccaaatgtttcctccctgcgcttctgaagaggatgacctcagagagcgactcc
ctgtgcctaacgcctaaggaaggttatgagttggcactttctgctctaggcggctgcatc
ttctacctgaagaaatgtctggtagacaaagagttgctctccctggcaaactttgaagaa
tacgtccctgttgacgttgaattggagaaagctgctggacctgccagttttttctcccag
acccgtcagcgtatggtcctggatggagtcaccctggcaaacttggaaatcttccagaac
ggttcaggaggaacagaagggacactgttggagcgtttggacacttgttccactccgttt
ggtaagaggctgctgaaacagtggctctgtgctcctctgtgtaaccccgcctccatcagg
gacagactggatgctgtggaggacctgatgggagctcaggctcaggccaccgaggtctca
gaaatgctgaaaaagcttccggatctggagcgtcttcttagtaaaattcacagcatcggt
actccactgaaaggccaggaccaccctgattccagagcggtgctgtacgaggaggtcacc
tacagcaagcgcaagatagccgacttcctttcggcactggaaggtttcaaaaccatgcaa
gacatcatttctgctttcgccccagttttaggtgacttccgctccaccctgcttcatcag
attatcagtgtgaagacggaagagaacgggctcttccctgatctctcagcagagctgaag
cgctgggaaactgcctttgaccaccagaaggctcgtacaacaggtgtcataacccctaaa
gctggctttgaccctgaatatgaccaagctctcacaggaatcaaaaactgcgagcgggac
cttcaggactacctggagaggcagaagaagaggctcggctgtaagaacatggcctactgg
gggaccgggcggaaccgcttccagatggaggttcccgacagcgtttcagagagaaacatc
ccagaggagtacgaggtgaagtccacaaagaaaggctggaagcgttacgtgacgaaggaa
agcgagcggctcttctcagagctgcaagggtttgaggagaagagggatgctgccctgaag
gactgcatgaggaggctcttctacaactttgacaagaactacaaagactggaagactgga
gcggagtgcatggcagtgctggatgtgctgctggctttatcctgctacagtctgggagga
gatgggcccatgaccagaccccaggtggtgcttccagaggaggacggccgcagcgcacct
ttcatcaacttaaccggatctcgtcatccatgtgtgacaaagacgtttttcggggatgac
ttcattcctaacgacatcttcatcggctgctctgggaatggtgacggtgatgggctggaa
ggttgcgcctcgtgtgtcctggttacgggtccaaacatgggtggaaagtcgactctcatg
cgacagtgtggacttgtgataattctagctcagctcggatgctatgttccagctgaaagc
ctctgttttactccagtcgatcgggttttcactcgactgggagcctcggatcggatcatg
gccggtgagagcaccttctatgtggagctcagtgagacagccagcatattgcaccatgcc
actaagcattcattggtgctccttgatgaactaggaaggggcacagccacatatgatggc
acagcaatcgccagcgctgttgtgaaggagcttgctgagaagatctgctgccgtacgctc
ttctccacacattaccactccctggtggaggactatgcaaacaatcctgctgtgcgactg
ggccacatggcatgcatggtggagaatgaatgcgaggatccgagtcaggaaacaattaca
ttcctctacaagtttatcagcggcgcttgtccaaagagttatgggttcaacgctgctcga
ctcgccaacctgccagaagaggtcatccagtctgggcacaggaaggccagagagtttgag
aaaagcaccatcagcctcagactcttcagaaaactctgtcagttcgctgaagacgcttct
caggacaaaacacgcttcacttcacttcttcaactgctcaacaccctgtag
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