Cyprinodon tularosa (White Sands pupfish): 119780372
Help
Entry
119780372 CDS
T07496
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ctul03009
]
119780372 (ighmbp2)
03012 Translation factors [BR:
ctul03012
]
119780372 (ighmbp2)
Enzymes [BR:
ctul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119780372 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
119780372 (ighmbp2)
Ribosome biogenesis [BR:
ctul03009
]
Eukaryotic type
Other ribosome biogenesis factors
119780372 (ighmbp2)
Translation factors [BR:
ctul03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119780372 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
nSTAND3
AAA_22
AAA_16
ResIII
UvrD-helicase
IstB_IS21
Flavi_DEAD
Helicase_RecD
T2SSE
PhoH
HEM4
SLFN-g3_helicase
NPHP3_N
AAA
Zot
AAA_25
SRP54
ABC_tran
ATPase
AAA_31
MeaB
ATPase_2
Motif
Other DBs
NCBI-GeneID:
119780372
NCBI-ProteinID:
XP_038136327
LinkDB
All DBs
Position
Unknown
AA seq
977 aa
AA seq
DB search
MALEKFVTKTLELLQEEREAEIEENRIWQENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VVILEPRKHLGFSSLPSNSFGPGDIVGLYDTSGCSAESQICTGIVTRISQASISVAFDDL
KDEASFDADGLYNLLKLANDVSYKRMKRALNALNGYRNGPAASLIPVLFGDAQPSAHSQS
NELEFFNSGLDDSQREAVSFALSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLARSKAKVLRLGHPARLLESIQKHSLDAVLACSDNASIIADIRKDIDK
AMVGMKKKSEKGERGNFRREIGELRKELRSRETAAIAQILKSADVVLSTNTGACDDGPLK
FLPAEHFDWVVIDECAQALESSCWIALLRARKAILAGDYKQLPPTIKSETAAAKGLSLSL
MERLIQMYGESVVRMLTVQYRMNSAIMDWASKEMYHGRLTAHSSVEGHLLKDLPGVTCME
ETSIPLLLIDTAGCGLSELEISDEQSKGNQGEVDIVGLHIKSLTEAGVKAKDIAVIAPYN
LQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHIAVVCDTQTVGNHAFLKSLIDHMTEFGEVRTAFEYLQDIVPQNYTRDHKDTKTAT
SCKSSKQKNRDQVSAKAKDGQKTTSSAKSNTAGSQNHAKQNTSAQKDQKETKIRYDEIRA
QVENFMKDANMENLQFPSSFNPHDRLMVHQIAEELGLVHESRGQGSDRCITVSRPLASKP
AEEPEQEETQEEETAPTLQSEQTSQPSLDLKALHLERMRREQQKREENIQKKKQENSTNG
KKKSKGKSKTKAGVCEIAAAAAPDDDFDALISAVVKADSVCSFVKCKASVLTLGQLCLFC
NRQFCLSHHIPEVHGCGDKAKSHARMRISKEGVLYAGSGKKDKSLDPDKKAYLQRKLDSK
LKDMASQRKPKNKETDT
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggccctggagaagtttgtgaccaaaactctggagcttctacaggaggagagggaggct
gaaatcgaggaaaacaggatatggcaggagaacatttccttaaaagatcttcagaataaa
ggagtttgcctgttaaagcttcagataggaagtcagtccacgggcctgtatggtcgcacg
gtcgtcattttagagccaagaaagcatcttggtttctcatcgctgccaagcaacagtttt
ggaccaggcgatattgttggcctatatgacacttctggctgcagtgcggaatcacagata
tgcacagggatagtaacaaggatcagccaagcttctattagtgtggccttcgatgacctg
aaggatgaagccagttttgatgcagatggcctttacaatctcttgaaactggccaacgat
gttagctataaacggatgaaacgggccttaaatgcattaaatggatacagaaacggacca
gctgcaagtttgatacctgttctcttcggtgatgcccaaccttctgcgcactcacagtca
aacgagttggagttctttaattcaggcttggatgattcccagagagaagcagtgtccttt
gctctttcacaaagagagctagctgtgattcatggaccgccaggcacgggaaaaaccact
acagtggtggagatcatcctgcaagccgtgaaacaaggccaaaaggtcctctgctgtgct
ccctccaatgttgccgttgataatttagtggaaagacttgcccgcagcaaagccaaagtc
ctgaggctgggccatcctgccagactgctggaatccatccagaaacactcgctggatgct
gtcctcgcttgtagcgacaacgcaagcatcatcgctgacatccggaaagatatcgacaaa
gcaatggtggggatgaagaagaaaagtgaaaaaggcgagcgaggaaactttagacgggaa
ataggggagctgaggaaagagctgaggagcagggagacggcagccattgctcagatactg
aagagtgctgacgtcgttttgtccaccaacactggtgcatgtgatgacggtcctctgaag
ttcctgccagcggagcattttgattgggtggtaatcgatgaatgcgcccaggctctggag
agcagctgctggatcgcgttactcagagcacgcaaagcaatcctggctggagactacaag
cagttacccccaaccatcaaatcagaaacggctgcggccaaaggcctgtctctaagtctg
atggaaagactgattcagatgtacggagagtcagtggtccgtatgctaacagtccagtac
cgcatgaacagtgctatcatggattgggcctccaaggagatgtaccatggaagactaact
gcgcacagttccgtggagggacatttattaaaggatctaccaggtgtcacctgcatggaa
gagaccagcattccgcttcttctgatcgacactgcaggatgtggtctgagtgaactggag
atctcagacgagcaatccaaaggcaaccaaggtgaggtcgacattgttggactgcacata
aaaagcttgactgaggctggagtgaaagctaaagacatcgctgttattgctccatataat
ctacaggttgatcttctgcgtcagaaactttctgcacggcacccagaactggaaataaaa
tctgttgacggatttcaaggcagagaaaaagaagctgtagtgctgtcattagttcgctcc
aacagaaaaggtgaggtgggtttccttgcagaagacagacggataaatgttgcggttaca
cgtgcaagacgccacatcgctgtagtgtgtgacactcagacggttgggaatcacgctttc
cttaaatctctgatcgatcacatgactgaattcggtgaggtcagaactgcattcgaatac
ctccaagacattgtgccgcagaactacaccagagaccataaagacacaaagactgccact
tcctgcaaatctagcaaacagaagaacagagaccaggtttcagctaaagcaaaggacggc
cagaaaacgaccagcagcgctaagagcaatacagctggttcacagaaccacgcaaagcag
aacacatcagcacaaaaagaccaaaaagagaccaagattagatacgatgagatcagagca
caggtggagaactttatgaaggatgcaaatatggagaatttacagtttccatcatctttc
aacccccatgaccggctgatggtccaccagatcgctgaggagctgggcctggttcatgag
agcagaggacagggcagcgacaggtgcatcacggtctccaggccgctggcatccaagcct
gccgaggagccagagcaggaggaaacccaggaggaagaaactgctcccactttgcagagc
gagcaaacatcccaaccttcattagatctcaaagctttacatctagaaaggatgaggaga
gagcagcagaaaagagaagaaaacatccagaaaaaaaagcaagagaacagcactaatgga
aaaaagaagtctaaaggaaagagcaaaacgaaggcaggtgtgtgtgagatcgctgctgcc
gcagctccagatgatgactttgatgctcttatcagcgcggtcgtgaaggcggacagcgtt
tgcagctttgtaaagtgtaaagcatctgtattaacgctcggccagctttgcctgttctgc
aacaggcagttctgtctcagtcatcacataccagaggttcacggctgtggagataaggca
aagtctcatgctcggatgagaataagcaaagagggggttctttacgctggcagcgggaag
aaggacaaatctttggaccccgacaagaaagcctatctgcaaagaaaactggactctaag
ctaaaagacatggcatcacaaaggaaaccaaaaaacaaggagactgacacttaa
DBGET
integrated database retrieval system
