Cyprinodon tularosa (White Sands pupfish): 119781153
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Entry
119781153 CDS
T07496
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119781153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119781153
03036 Chromosome and associated proteins [BR:
ctul03036
]
119781153
Enzymes [BR:
ctul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119781153
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119781153
mRNA degradation factors
5'-3' decay
Decapping complex
119781153
Chromosome and associated proteins [BR:
ctul03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119781153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
MS_TIM-barrel
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
119781153
NCBI-ProteinID:
XP_038137466
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MAMARTENLGPVMMGLNKQNGQLRGQTKPAAGPPTSTPAKNPVGSNQEGGGIKFGDDWKK
CLQLPPRDNRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGR
DILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQMSQICIQLSKHLGGV
KVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQVMVMDEADKLLSQ
DFVVLIEDIISFLAKNRQILLYSATFPISVQKFMVKHLQKPYEINLMEELTLKGITQFYA
YVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRN
RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLA
INLITSEDRFNLKAIEEQLVTDIKPIPSSIDKSLYVAEYHTSSGDCEVEEVEEKPQRQQD
ST
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggcccgaacggaaaaccttggtccagtcatgatgggactgaataagcagaac
gggcagctgagaggacagaccaaacctgctgcaggaccccccacatcaacaccagcaaag
aatccagttgggagcaaccaggaaggaggaggaatcaagttcggggacgactggaagaaa
tgcctacagctccccccgagggacaacagggtcaaaacctctgacgtcacggcgacgaag
ggcaacgagtttgaagattactgcttgaaaagggaacttctgatggggatctttgagatg
ggctgggagaagccgtcgccgatccaggaggagagcattcctatcgcgctgtcggggcgg
gacatcctggctcgagcgaaaaacggaacagggaaaagcggagcctatctgatcccgctg
ctggagaggatagacctgaagaaggaccacatacaggccatcgtcatggtgcccacgcgg
gagctggctctgcagatgagtcagatctgcatccagctcagtaaacatctgggaggagtg
aaagtcatggcgacgaccgggggaaccaacctgcgggacgacatcatgcgtctggatgag
actgtacatgtggtcatcgccacgcccggtcggatcctggacttgatcaaaaagggggtg
gcgaaggtggacagggtccaggtgatggtgatggacgaggccgacaaactgctctctcag
gactttgtggtcctcatcgaggacatcatcagcttcctggctaagaaccggcagatcctg
ctctactcggcaaccttccccatcagcgttcagaagtttatggtgaagcaccttcagaag
ccctacgagatcaacctgatggaggagctgaccttgaagggcatcactcagttctacgcc
tacgtgaccgaacggcagaaggtccactgcctcaacacgctgttctccaggcttcagatc
aaccagtccatcatcttctgtaactccactcagagggtggagctcctggccaagaagatc
acccagctgggatactcctgcttctacatccatgccaagatgatgcaggaatacaggaac
cgcgtgttccatgacttcagaaatggcctgtgccggaacctggtctgcaccgatctcttc
accagaggaatcgacatccaggctgtgaacgtcgtcatcaactttgatttccctaaaaat
gctgaaacataccttcatcgcatcggaagatcagggaggtttggccacctgggtctggcc
atcaacctgatcacctcagaggaccgcttcaacctgaaggccatcgaggagcagctggtg
accgacatcaagcccatccccagcagcatcgacaagagcctgtatgtggccgagtaccac
accagcagcggcgactgtgaggtggaggaggtggaggagaaaccccaacgccagcaggac
agcacctaa
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