Cyprinodon tularosa (White Sands pupfish): 119781922
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Entry
119781922 CDS
T07496
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119781922 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctul03400
]
119781922 (msh2)
DNA repair and recombination proteins [BR:
ctul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119781922 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
119781922
NCBI-ProteinID:
XP_038138493
LinkDB
All DBs
Position
Unknown
AA seq
937 aa
AA seq
DB search
MAVQPKQNQNLSLDRAAETGFLNFIFSMKEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVF
KTNGVIKYLGSGTRKLESVILSKLNFEAFVKDLLLVRQYRVEVYRNHSKSSKEHDWRIEY
KASPGNLTQFEDILFGGGTWGEGCAGVVAVRFAMGADGQRVVGVGYVDAAQRTMGVCEFP
DNEIFSNLESLLVQISPKECLLAQGECSSDGNKLREVVQRGGVLVSDRKRAEFNSKDIVQ
DLNRLLRSKRGDTVASNTLPELDKQVAMSCLAAVVRFLELLSDESNLNSFSLTTLELGQY
MRLDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKAKIEER
LDLVESFVCDSELRQTCQEDLLRRFPDLHRMAKKFHRHTATLQDCYRVYQAVSHIPALVS
ALESYSGSYKVLFLAVFASPLADLQTDFIKYQEMIETTLDMNQIEHHEFLVKASFDPVLS
ELREKMDALEKSMQAVLSGAARELGLEAGKTVKLESNAVHGFYLRVTCKEEKSLRNNKKF
TTLDVQKNGVRFTNSKLSSLNEEYTRSREEYEEAQNAIVKEIINIASGYVDPLQTLSDVI
AQLDAMVSFAVASVSAPVPYVRPRLLDDGCRRLELLQARHPCMETDADTAFIPNDIIFVQ
GEKSFYIITGPNMGGKSTFIRQVGLIVLMAQIGCFVPCEKAELSVIDSVLARVGAGDSQV
KGVSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAIGEHIASKIGCFCL
FATHFHELTALAAQQLTVYNLHVTALTSHNTLTMLYRVKPGVCDQSFGIHVAELACFPQS
VLAVARDKAEELEEFQEPVGDDPNQAEEPEAKRRRTEKQVGENLIQDFLLKVKALPAATM
SEEEVKVEIKRLKDDLVSKNNTHITEILARCAPVKTA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcagaaccagaacctttctctggacagggcggccgaaaccggc
tttctgaatttcattttttccatgaaggagaaaccggacacaactttcaggatattcgac
cgaaacgactactacaccgtccacggaaaggacgccatctttgcggccaaggaggttttt
aagactaacggagtcatcaaatatctgggttcagggactcgtaagctggagagcgtgatc
ctgagcaagctgaactttgaggcctttgtgaaggacctgttgttggtgaggcagtacaga
gtagaggtctacaggaatcacagcaagagcagcaaggagcatgactggaggatcgagtac
aaggcctctcctggaaacctgacccagttcgaggacattctgttcggtggtggaacctgg
ggggagggctgcgcgggagtggttgccgtgcgcttcgcgatgggagccgatggccagcga
gtggtcggcgtcggctatgttgacgcggctcagaggaccatgggggtgtgcgagtttcca
gacaatgagatcttctccaacctggagtccctgcttgtccagatcagtcccaaagagtgt
ctcctggctcagggtgaatgcagcagcgatgggaacaagctgcgggaggtggtccaacgt
ggcggtgtgctggtctccgacagaaagagagctgagtttaacagcaaggacatcgtccag
gaccttaacaggctactgagatctaagaggggagatactgtggcgagcaacacgctgccc
gaactggacaagcaggttgccatgtcttgtttggctgcggtggtgcgattcctcgagctc
ctctctgatgagtccaacttgaactccttcagcctcaccacgctggagctgggtcagtac
atgcggctggacaacgccgccgtcagggctctcaaccttttccagggttcgcctgacgac
accagtggagcgcattcattggctggtttgttgaacaagtgccgtacgcctcagggtcag
cggctggtcaaccagtggatcaaacagccacttatggacaaagccaagatagaggaaaga
ctagacctcgtggagagttttgtgtgcgactcagagctgaggcagacttgtcaggaggat
cttctgcgacggttcccagaccttcatcgcatggccaaaaagtttcaccgccacacagcc
acactgcaggactgctatcgtgtctatcaggctgtgagtcacattcctgctctcgtctca
gccttggagagttactcaggcagctacaaggtgcttttcctcgccgtgttcgcctcgcct
cttgcagacctgcagacagattttatcaagtaccaggagatgattgaaaccactctggac
atgaatcagattgagcaccacgagttcctggttaaagcctcatttgatcctgtcctgagc
gagctcagagagaagatggacgcactggagaaaagcatgcaggctgtactaagcggagca
gccagagaattaggcctggaagctggaaagaccgtgaagctggagtctaacgctgtgcat
ggcttctacctgagagtcacttgcaaggaagagaagagtctaaggaacaacaagaagttc
accaccctggatgttcagaaaaatggagttcgcttcacaaacagcaagctaagctctctg
aatgaggaatacaccaggagcagagaggagtacgaggaggcccagaacgccattgtcaaa
gagatcatcaacatcgcctcaggttacgtggatcctcttcaaacgttgagtgacgtcatc
gcacagctggacgccatggtgagctttgccgtggcctctgtgtctgctccggtgccgtac
gtgcggccccgactcctggatgacggctgcaggcgcctggagctgctgcaggccagacat
ccttgcatggagacagatgcagataccgctttcatacccaatgacatcatcttcgtccag
ggggagaagagcttctatattataacagggccaaatatgggtggaaagtctacctttatc
cggcaggtgggtttgatcgtactgatggctcagatcggctgctttgtgccatgtgagaag
gcggagctcagtgtgattgacagcgtcctggccagagtgggagcaggagacagccaggtg
aagggagtgtccaccttcatgtctgagatgttggaaactgctgccatcctgcggtctgcc
acggaaaactccctcatcattatcgacgagctcggccgtggaacctctacgtacgacggc
tttgggctggcctgggccatcggtgaacacatcgcctccaaaatcggctgcttctgcctc
ttcgcaacgcacttccacgagctgacggccctggcagcgcagcagctgaccgtctacaat
ctgcacgtcaccgccctgacgtcccacaacacgctaacaatgctctacagagtcaaacca
ggtgtttgtgaccagagttttgggatccatgttgctgagctggcttgcttccctcagtca
gtgctggcggtggcaagggacaaggcagaggagctggaggagttccaggaaccagtaggg
gatgatccaaaccaggcggaagagccagaggccaagaggagacgaactgagaagcaggtg
ggagaaaatctgatccaggactttctgctgaaggttaaggcactccctgctgctaccatg
tctgaggaggaggtgaaagtggaaatcaagagattaaaggatgatttggtgtccaaaaac
aacacgcacataactgagatactcgctcgctgcgctcctgtgaaaactgcctga
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