Cyprinodon tularosa (White Sands pupfish): 119782121
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Entry
119782121 CDS
T07496
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ctul04147
]
119782121 (col18a1a)
00535 Proteoglycans [BR:
ctul00535
]
119782121 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
ctul00536
]
119782121 (col18a1a)
Exosome [BR:
ctul04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119782121 (col18a1a)
Proteoglycans [BR:
ctul00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
119782121 (col18a1a)
Glycosaminoglycan binding proteins [BR:
ctul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119782121 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
119782121
NCBI-ProteinID:
XP_038138853
LinkDB
All DBs
Position
Unknown
AA seq
1373 aa
AA seq
DB search
MRIWFKVLYLLTLWVVYSDAWFWDWSKTGKTLAPRSDMEGSGSVTGSGEQLSESSTTVGV
EIIDEGRVLEKVGQSWDVPTEGPQLTTVIPSKHPQNGHGAEKVTAGMPSHRNKPEDKGVS
LLKLIGDPPPDSIPEVDGPDNSPAYLFGPDSTTGQLARAHFPNPFYRNFALIFSVKPTSD
DAGTIFAITDASQQIMHVGVKLSKVQGGEQNVIFYYSQPGAERSYEAASFPVPSMKDTWN
RFAIAVNDNLVAFYPNCDGGLRSVRLERSPDEMNLGSGSGVFVGQAGGEFPDKFQGAISE
LRVVGDPRAAERLCEEDDDSDMASGEGSGYEETRHANSHREKEQNMQKALASLTPIPQPP
LDRKGEEGTFLETGAVFVKGEKGDKGDQGPKGERGLRGPQGEAGISYKGGVGGHKGEPGE
KGAKGSAGFGYPGKKGDTGPPGPPGPPGPPGPATEYSVGSDGSVVSKVPGPRGPPGQPGP
QGPPGEDGEPGDPGEDGKTGPQGPRGFPGTPGDPGLKGEKGDRGEGQPGPRGPPGPPGPP
GTGFRSTFEDMEASGFPDLESIRGLPGPPGPPGPPGLPGFPSANTAVSSGASGPPGKDGE
PGQPGLPGLPGADGLPGAPGPKGEKGDSGELGLPGAIGEKGAPGEPGLPGAAGQPGLAGL
PGPMGPVGPPGPPGPPGPAHRVGFDDMDDSSGTFTNGLPGVRGPEGIQGPPGLPGQPGSP
GFPGIQGPKGEQGPSGSDGQPGLDGFPGPPGQKGDRGDKGETGEPGRDGTGLPGPPGPPG
PPGEITYQHSDNGASGIPGRAGFPGPVGPKGDRGDPGPPGYGLKGEKGEPGLIIGPDGNP
LYLGGLTGPKGDRGPQGPAGPFGPQGPPGLKGEIGMPGRPGRPGVNGYKGEKGEPGGGAG
YGYPGVAGPPGPPGPPGPPGPAISVDRFNRFDENSRSYQVVKGEKGDRGPPGIPGTASDI
DIYSLKNKLKGEHGDPGVKGEKGEPGGGYYDPRFGGPLGPPGPPGNPGLPGPKGETIVGP
PGPQGPPGPPGAGYDGRPGPAGPPGPPGPPGSPSFSGTYRPNYPVSIPGPPGPPGPPGSP
GVSSGVMVLRSYDIMIATARQQPEGSLIYILDKADLYLRVRDGIRQVLLGEYRTFFGDLG
NEVAEVQPPPVVVYPHTPERNANNGAGRYSEGSAVIRPIEILPQQPSPPVAAADSSESGL
HLIALNAPQSGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRDSFP
IMNLKNQVLFSSWESIFSEDKSKMRENVPLYSFDGRDILRDSAWPEKMVWHGSSKKGHRQ
MDHYCETWRAGDRAVTGLASSLQSGHLLQQTPSSCSSSYVVLCIENAFTSPSK
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgaggatctggtttaaagttttgtatcttctcaccctgtgggtggtctactctgatgct
tggttctgggactggagtaagactggtaaaacattggccccaaggtcggatatggagggt
tctggcagtgttacaggtagtggagagcaactatctgagagtagcaccacagttggagta
gagatcattgatgaaggacgtgtgcttgaaaaggttgggcagagctgggatgtgcctact
gaaggtcctcaactgacaactgtaattccttcaaaacatccgcagaatggacatggagca
gaaaaggtcactgcaggaatgccgtctcacagaaataaacctgaagacaaaggagtctcg
ctgctgaagctaatcggagatcctcctccagacagtattccagaggtggacggaccggac
aacagccccgcttacctcttcggtccagattccaccacgggtcaacttgcccgtgcacac
ttccccaacccattctacagaaactttgccctcatcttcagcgtgaaaccaacctctgat
gatgccggcaccatcttcgccatcacagatgcctcgcagcagatcatgcatgtgggggtc
aaactgtcaaaagtccagggtggcgagcagaacgtcattttttactacagccagccgggt
gcagagcggtcctacgaagcggccagtttcccggtgccctccatgaaggacacctggaac
cgttttgctatcgctgtaaacgacaacctagtggccttctaccctaactgcgatggaggg
cttcggagcgtaagattggagagatcccctgatgagatgaacctaggaagtggttccggt
gtgtttgtaggtcaagctgggggagaatttcccgataaatttcagggtgcgatcagtgag
ctgagggtggtgggagacccccgtgctgcggagcggctctgcgaggaggacgatgactcg
gatatggcttcaggagaaggaagtggctacgaagaaaccagacatgcaaattctcacaga
gagaaagagcaaaacatgcagaaagccttggcgtctcttacacctatcccacagccacca
ctggacaggaaaggagaagagggaaccttcttagaaacaggtgcagtctttgttaaagga
gaaaagggcgacaagggggaccaaggaccgaaaggagagaggggtttgaggggtccgcag
ggagaagcaggcatcagctacaaggggggagtcggtggacacaagggagaacctggtgaa
aagggagcaaaggggagcgcaggctttggatatcctggcaaaaagggcgacaccggccct
ccaggaccaccaggcccacctggtcctccaggccctgccactgagtattcagttggaagt
gatggatcagttgtttcaaaagtacctggaccccgaggcccacctggacaaccaggtcct
cagggacccccaggagaggatggagaaccgggggatcccggggaagatggaaaaaccggg
cctcagggaccccgaggctttcctgggactccgggtgatccaggactgaaaggcgaaaag
ggtgaccgtggagagggccagcctgggccccggggccccccaggacctccaggaccaccg
ggtacaggattcagatctacgtttgaagacatggaggcctctggattccccgatttggaa
tccattcggggacttccaggtccaccaggtccgcctggtcccccgggtcttccaggtttc
ccatcagcaaacacagcagtgagctctggagcttctgggcccccaggaaaggatggagag
ccaggtcaacctggtctgcctggtttacctggtgctgatggtctccctggagctcctggt
ccaaagggtgaaaagggagattcgggcgagcttggactcccaggggcaatcggagaaaag
ggagctccaggagaacccggtttacccggcgctgcaggacaacctggactggctggtctt
ccaggaccgatgggaccagttggtcctcctggacctccaggccctccaggaccagctcat
cgggttggatttgatgacatggacgactccagtgggactttcactaatggacttcctggt
gtcagaggaccagaagggatacagggtcctcctggtttacctggacaaccaggtagccca
ggttttcctggtatacagggtccaaagggtgagcagggtccctcaggaagcgacggacaa
ccaggtctggatggcttcccaggacctccgggccaaaagggagacagaggtgacaaagga
gagacgggtgaacccggtcgagatggaactggactgccaggtccacctggaccacctgga
ccaccaggagagataacataccagcattctgacaatggggcctctggtatacctggcaga
gctggatttcctggtcctgttggcccaaagggggacagaggtgaccctggtccaccaggg
tatggcctaaagggtgaaaaaggagagccaggcttgataatcgggcctgatggaaatcct
ttgtacctgggcgggttaactgggccgaagggagacagaggacctcaaggacctgctgga
ccttttggtcctcaggggcctcctggactgaaaggtgaaataggcatgcctggaagacct
ggtcgcccaggtgtgaatggatacaagggtgaaaaaggagagccagggggtggtgcaggt
tacggatacccgggagtggcaggtccaccaggaccgccaggaccacctggaccaccgggg
ccggccatttctgtggatcgatttaatcgctttgatgaaaattcaaggagttaccaagtg
gtcaaaggagaaaaaggagaccgtggacctcctgggatcccagggacagcttcagatatc
gatatttactcactcaagaataagttgaagggagaacatggagatccaggagtgaaggga
gagaagggagagccaggtggtggatattatgacccacgttttggaggaccactgggtcca
ccaggacctccaggaaacccaggcctaccaggtccaaagggtgagactatagtgggccct
cctggacctcaaggacctccaggacccccaggtgctggttatgatggacgtccaggtcca
gcaggaccacctggacctccaggaccgccagggtctccctcattctctggaacatacagg
cccaactatcctgtcagtatccctggacctccaggccccccaggcccacctggaagtcct
ggtgtctcctctggggtgatggtgttgaggtcatatgacatcatgattgctacagccagg
cagcagcctgagggaagtctcatatacatactggacaaagcagacctttatctgagagtg
cgagatgggattcgacaagtcctactcggagagtacagaaccttctttggagatctgggc
aatgaggtggcagaagtccagcctccaccggtggttgtgtacccccacacccctgaaagg
aacgccaacaatggagcaggtcgttattccgagggcagtgcagtcatccgacccattgag
atcctgccgcagcagcccagcccccccgtggctgcagccgactcttcagaatcaggactc
cacctcattgccttgaacgcccctcagtctggcaacatgcgagggattcgtggtgcagac
ttcctgtgcttccaacaggctcgagctgttggtcttaaaggaacattcagggccttcctg
tcctccaagcttcaggacctctacaccatcgtccgcaggtcggaccgagattcattcccc
atcatgaacctcaagaaccaagtgttgttcagcagctgggagtccatcttcagtgaagac
aaaagcaaaatgagggagaatgtacctttatactcgtttgatggtagagacatcctcagg
gacagtgcatggccagaaaagatggtctggcacggatctagcaaaaagggccatcggcaa
atggatcattactgtgaaacatggcgggcgggcgatcgcgcggtgacaggcctggcgtcg
tccctgcagagcggccatctcctgcagcagacgcccagcagctgttccagctcctacgtc
gtcctttgcatagagaacgccttcacatcgccctctaaataa
DBGET
integrated database retrieval system
