Cyprinodon tularosa (White Sands pupfish): 119783411
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Entry
119783411 CDS
T07496
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119783411 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctul03041
]
119783411 (ddx42)
Enzymes [BR:
ctul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119783411 (ddx42)
Spliceosome [BR:
ctul03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
119783411 (ddx42)
Complex B
119783411 (ddx42)
Complex C
U2 SnRNP specific factors
119783411 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
CARF-assoc_HTH
Motif
Other DBs
NCBI-GeneID:
119783411
NCBI-ProteinID:
XP_038140854
LinkDB
All DBs
Position
Unknown
AA seq
901 aa
AA seq
DB search
MNWNKGGQGVKRGFGFGGFSLAGKKEEPNVPPRSQTAFGSSGSSGGYGKSPQLPSFYKIG
SKKATFDEENAYFEDDEEESSSNADLPYIPAENSPTRQQMQSSGGGGSDSEDDPLDAFMA
EVESQAAKDMRKLEEKEKSSSKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENVDY
DSDGNPIPSTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEELSSLTGTQVMELRQKLNLR
VSGAAPPKPSTSFAHFGFDEQLMHTIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEQGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVR
SIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVELLHSGS
DKWNWLTRRLVEFTSTGSVLIFVTKKANSEELATNLTQEGYSLGLLHGDMDQSERNKVIS
DFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TGKDTSFAGDLVRNLEGANQAVPKELMDLAMQNPWFRKSRFKGGKGKKPNIGGGGLGYKE
RPGLGAESSERSSSLSSSSGFEGYSKPTTGAMGDRMSALKQAFQAQYKSHFIAATSGPPK
LSTKSSSSSCWTSAGSLNSVPTEAANGSERHNMAAFSMPGFTSAGSLSSVPNVQTSSQQN
NPSPAPPTHRESPRDRYGDSQGRSGDSHHRYSDRSDRHSGEDRYGDRDRHGDRDRDRHGD
RDRHSSRHSDSRNGDGSRRDRDERRGDRDGGDRGSGEGRDRGDDSFAVPEPPKRRKSRWD
N
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaacaaaggtgggcaaggagtgaagcgtgggtttggctttggaggtttttcc
cttgcaggaaaaaaagaggagcctaacgttcctccaagatctcaaacagcatttggatct
tctggatcaagtgggggttatggaaaaagcccacagcttccatctttctataaaatagga
tccaaaaaagctacttttgatgaagaaaatgcgtactttgaagatgatgaagaagagtcc
agtagcaatgccgaccttccctacattcctgctgagaactcacccacacggcagcagatg
cagtcgagtggcggtggtggctcagatagcgaagatgaccctttagatgccttcatggca
gaggttgagagccaagcagcgaaagacatgaggaaactagaagaaaaggagaaatcctca
tccaagggtattcgtgatgacattgaggaagaagatgagcaagaagcctatttccgctac
atggcagagaatcctacagccgggctgacccaagaggaagaggaggaaaacgtcgactat
gacagtgatggaaatcctattccttctacgactaagaaaataatcctgcccctgccgcct
attgatcactcagagattgactacccaccctttgagaaaaacttttacaatgaacatgag
gagctaagcagtctcacaggtactcaagtgatggagttaaggcagaagctgaacttgcgg
gtttctggcgctgcccctccaaaaccttccaccagctttgcccattttggctttgatgag
cagcttatgcacacaattcgaaagtctgagtatacacagcccacaccgattcagtgtcag
ggtgtcccgattgccctctctggacgcgacatgatcggcattgcaaaaactggaagtggt
aaaactgcagcttttatctggccaatgctggttcatattatggaccagaaggagctggag
cagggagaggggcctattgcagtgattgtttgtcccaccagagagctttgtcagcagatc
catgctgaatgtaagcgttttggaaaagcctactcgctgcgttctgtagctgtttatgga
ggaggcagtatgtgggagcaagccaaggctctgcaggagggagcagagattgtagtctgc
acaccaggtcgattgattgatcatgttaaaaagaaggctacgtccttgcagagggtgaca
tacttggtttttgatgaggctgatcgcatgtttgatatgggctttgaatatcaggtgaga
tcaattgcaagccacgttcgcccagacaggcaaactcttctctttagcgccacctttcga
aaaaagattgagaggttggcaagggacatcttagttgatcctattcgggtcgtgcaggga
gacatcggagaggccaatgaggatgtgactcaggtggtggagctgctgcacagtggatca
gataaatggaactggttgacccgaaggctggtcgagttcacttccactggctctgtcctc
atttttgttaccaagaaggctaactctgaggaactggccactaacctaactcaagaggga
tacagccttggtctcctgcatggagatatggaccagagtgagaggaacaaagtcatcagc
gacttcaagaagaagaacttacccgttctggttgccactgatgtagccgcccgtggtctg
gacatcccgtcaattcgcacagtagtgaactatgatgtggcacgcgacatcgacacacac
actcacagaatcggtcgaacaggtcgcgctggagaaaagggtgtggcctacaccctgctc
acaggcaaagacacctcatttgctggtgacctggtgcggaacttggagggagcaaatcaa
gctgttcctaaggagctcatggatttagccatgcagaatccctggttcaggaaatcacgc
tttaaggggggtaaagggaagaagcccaacatcggtggaggtggtcttggttataaagag
cgaccaggcctgggggctgaaagctctgaacgtagcagcagcttgtcttcctctagtggt
tttgaaggctatagtaaaccaacaacaggggcgatgggggaccgcatgtctgcactgaaa
caagccttccaggcacagtacaagagccacttcatagctgcaaccagtggacctccaaag
ctcagcaccaagtccagcagctcctcctgctggacgagtgctggaagcctgaactctgtg
ccaacagaggctgccaatggctctgagcgacacaacatggctgctttttcaatgcctggt
ttcacgagtgctggctccctgagttcagtgcccaacgttcaaaccagttcacagcaaaat
aacccttcgcctgcacctcccacgcacagagagagtcctcgcgacagatatggagactcc
cagggacgctctggagacagccatcaccgctacagtgacagaagtgatcgtcatagtggt
gaggatcgctacggcgaccgggatcgacacggtgacagagatcgtgaccgccatggcgac
agggatcgccacagcagcaggcacagtgacagccgtaatggtgatggaagcaggagggac
agagatgagcgaaggggtgatagggatgggggagacaggggaagtggggaggggagggac
agaggagatgatagctttgctgttcctgaaccaccaaaacgtagaaagagccggtgggac
aactaa
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integrated database retrieval system
